miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6776 3' -60.2 NC_001875.2 + 4535 0.66 0.658428
Target:  5'- cGCCGGCugcGGUuccugcgguuuggGGGCCGCcaGCAAC-GCGa -3'
miRNA:   3'- -CGGUCG---UCG-------------CCCGGCG--UGUUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 40163 0.66 0.652353
Target:  5'- gGCCGGCaacgcgaugcgcaugGGCGuGCCGUACGcguacggccagcuGCUGCGc -3'
miRNA:   3'- -CGGUCG---------------UCGCcCGGCGUGU-------------UGACGCa -5'
6776 3' -60.2 NC_001875.2 + 113839 0.66 0.649312
Target:  5'- -aCAGCGGgucgggguCGGGCCGCACGuugaAC-GCGg -3'
miRNA:   3'- cgGUCGUC--------GCCCGGCGUGU----UGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 54381 0.66 0.649312
Target:  5'- -aCAGCAcGuCGGGCCGC-CAGUUGUGg -3'
miRNA:   3'- cgGUCGU-C-GCCCGGCGuGUUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 124888 0.66 0.639172
Target:  5'- cGCCguGGCGaugucGCGGcGCaCGCACGAC-GCGUu -3'
miRNA:   3'- -CGG--UCGU-----CGCC-CG-GCGUGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 119655 0.66 0.639172
Target:  5'- gGCCAGgcaaaccuCGGCGGcGgCGCACAGCgGCu- -3'
miRNA:   3'- -CGGUC--------GUCGCC-CgGCGUGUUGaCGca -5'
6776 3' -60.2 NC_001875.2 + 33032 0.66 0.639172
Target:  5'- aGCgCAGCgcGGCGGgcGCCGCGCcGC-GCGg -3'
miRNA:   3'- -CG-GUCG--UCGCC--CGGCGUGuUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 86204 0.67 0.629026
Target:  5'- aCUAGaGGCGccGCCGCACAACUuGCGg -3'
miRNA:   3'- cGGUCgUCGCc-CGGCGUGUUGA-CGCa -5'
6776 3' -60.2 NC_001875.2 + 3887 0.67 0.629026
Target:  5'- cGCCaAGCugGGCaGGCUGUACAaggcuaagaaGCUGCGc -3'
miRNA:   3'- -CGG-UCG--UCGcCCGGCGUGU----------UGACGCa -5'
6776 3' -60.2 NC_001875.2 + 130096 0.67 0.629026
Target:  5'- cGCCgacggaaauGGCGGCGgcGGCgGCGCGACcgGUGUc -3'
miRNA:   3'- -CGG---------UCGUCGC--CCGgCGUGUUGa-CGCA- -5'
6776 3' -60.2 NC_001875.2 + 46372 0.67 0.629026
Target:  5'- gGCC-GCAGCu-GCUGCGCAugUGCa- -3'
miRNA:   3'- -CGGuCGUCGccCGGCGUGUugACGca -5'
6776 3' -60.2 NC_001875.2 + 7999 0.67 0.629026
Target:  5'- aCCGGCGGCuGaUUGCGCAACUGCu- -3'
miRNA:   3'- cGGUCGUCGcCcGGCGUGUUGACGca -5'
6776 3' -60.2 NC_001875.2 + 50355 0.67 0.629026
Target:  5'- cGUUGGCGuCGGGCCGCGCGcgccacugACcGCGg -3'
miRNA:   3'- -CGGUCGUcGCCCGGCGUGU--------UGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 66615 0.67 0.629026
Target:  5'- uGUCgGGCAGCGuGGCgCGCuugaGCAACaGCGUu -3'
miRNA:   3'- -CGG-UCGUCGC-CCG-GCG----UGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 66661 0.67 0.629026
Target:  5'- gGCCAGCuGCuGGUCGaACGGCaGCGg -3'
miRNA:   3'- -CGGUCGuCGcCCGGCgUGUUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 65742 0.67 0.628012
Target:  5'- cGCCcGCcgcGCGGGCCucggcguauucguGCGCGGCggGCGg -3'
miRNA:   3'- -CGGuCGu--CGCCCGG-------------CGUGUUGa-CGCa -5'
6776 3' -60.2 NC_001875.2 + 85827 0.67 0.618883
Target:  5'- cGCCAGCugcGUGGGCgGC-CGAucCUGCu- -3'
miRNA:   3'- -CGGUCGu--CGCCCGgCGuGUU--GACGca -5'
6776 3' -60.2 NC_001875.2 + 98647 0.67 0.608749
Target:  5'- uGCCGGCAGCGaGGC-GCugGAauguaagGUGUg -3'
miRNA:   3'- -CGGUCGUCGC-CCGgCGugUUga-----CGCA- -5'
6776 3' -60.2 NC_001875.2 + 48855 0.67 0.608749
Target:  5'- cGCCGGCgacgAGCGGcGCCGCGaggaaAACguaGUGUu -3'
miRNA:   3'- -CGGUCG----UCGCC-CGGCGUg----UUGa--CGCA- -5'
6776 3' -60.2 NC_001875.2 + 94822 0.67 0.608749
Target:  5'- gGCCAuaaauuGCAGCGuGcGCUGCAUcAUUGCGg -3'
miRNA:   3'- -CGGU------CGUCGC-C-CGGCGUGuUGACGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.