Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 105879 | 0.69 | 0.989444 |
Target: 5'- uGACcgaGUcGGUGCAGUACccgaugGCGGg -3' miRNA: 3'- gCUGuugUA-CCACGUCAUGaaa---CGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 57127 | 0.69 | 0.986473 |
Target: 5'- uCGGgAuCGUGGUGUAGUGCgugggcgccaacgGCGGg -3' miRNA: 3'- -GCUgUuGUACCACGUCAUGaaa----------CGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 108061 | 0.7 | 0.982484 |
Target: 5'- uCGGCGACcUGG-GCAacGUGCgcucUGCGGg -3' miRNA: 3'- -GCUGUUGuACCaCGU--CAUGaa--ACGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 29551 | 0.7 | 0.982484 |
Target: 5'- aCGACAAaauugcCGUGGUGaAGUACgacGCGGc -3' miRNA: 3'- -GCUGUU------GUACCACgUCAUGaaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 37320 | 0.7 | 0.97533 |
Target: 5'- aCGcCGACG-GGcUGCcGUACUUUGUGGa -3' miRNA: 3'- -GCuGUUGUaCC-ACGuCAUGAAACGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 86164 | 0.7 | 0.972528 |
Target: 5'- uGACgGACGUGGUGCGGgAUUUUGaCGc -3' miRNA: 3'- gCUG-UUGUACCACGUCaUGAAAC-GCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 38503 | 0.71 | 0.962755 |
Target: 5'- aCGACAAgGUGGUGCuGGUGuCgcaGUGGg -3' miRNA: 3'- -GCUGUUgUACCACG-UCAU-GaaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 77356 | 0.71 | 0.959018 |
Target: 5'- gCGACAACAaGGUcagccaGguGUACgugGCGGa -3' miRNA: 3'- -GCUGUUGUaCCA------CguCAUGaaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 56251 | 0.71 | 0.959018 |
Target: 5'- cCGGC-GCGcGGcUGCAGUACUUUGCc- -3' miRNA: 3'- -GCUGuUGUaCC-ACGUCAUGAAACGcc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 52630 | 0.72 | 0.950789 |
Target: 5'- uCGcACAACAaGGUGCAGgug--UGCGGc -3' miRNA: 3'- -GC-UGUUGUaCCACGUCaugaaACGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 86121 | 0.72 | 0.936495 |
Target: 5'- gCGugGACGUGGccaucgGCAGUGCgcgGCGc -3' miRNA: 3'- -GCugUUGUACCa-----CGUCAUGaaaCGCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 106010 | 0.75 | 0.85558 |
Target: 5'- cCGACuuCAucUGGgcguUGCAGUGCUcgGCGGg -3' miRNA: 3'- -GCUGuuGU--ACC----ACGUCAUGAaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 10622 | 0.75 | 0.85558 |
Target: 5'- aCGACAACAaccggccggUGccgcccagcGUGCAGUACUUgggcgGCGGa -3' miRNA: 3'- -GCUGUUGU---------AC---------CACGUCAUGAAa----CGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 9963 | 0.75 | 0.82987 |
Target: 5'- aCGACAGCGUGGUGCAauugACggcgUGCaGGc -3' miRNA: 3'- -GCUGUUGUACCACGUca--UGaa--ACG-CC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 67167 | 0.77 | 0.772267 |
Target: 5'- gGACAGCGUGGUggacaccGCGGUcggguagccGCUUUGCGa -3' miRNA: 3'- gCUGUUGUACCA-------CGUCA---------UGAAACGCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 88103 | 1.13 | 0.007762 |
Target: 5'- cCGACAACAUGGUGCAGUACUUUGCGGg -3' miRNA: 3'- -GCUGUUGUACCACGUCAUGAAACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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