miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 5' -54.8 NC_001875.2 + 21679 0.66 0.899032
Target:  5'- gCGACG-CCGCCCgACgAGCgcgacGCGGu -3'
miRNA:   3'- aGUUGCuGGCGGGgUGgUUGaa---CGUC- -5'
6777 5' -54.8 NC_001875.2 + 7336 0.66 0.899032
Target:  5'- gUCAGCGACCugcuGCCCgGCCAAaccaucaugUGUAu -3'
miRNA:   3'- -AGUUGCUGG----CGGGgUGGUUga-------ACGUc -5'
6777 5' -54.8 NC_001875.2 + 43601 0.66 0.899032
Target:  5'- gCAGCGGCgGCgCgCGCC-GCUUGCGc -3'
miRNA:   3'- aGUUGCUGgCGgG-GUGGuUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 41541 0.66 0.899032
Target:  5'- ---gUGACCGaCgCCugCAACUUGCGc -3'
miRNA:   3'- aguuGCUGGC-GgGGugGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 104033 0.66 0.896385
Target:  5'- cCAACGGCCaaugccgcaucaaCCCCaACCGAUUUGUGGu -3'
miRNA:   3'- aGUUGCUGGc------------GGGG-UGGUUGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 14979 0.67 0.892343
Target:  5'- aCAACG-CCGCUCCAgcaCAACgauugGCGGu -3'
miRNA:   3'- aGUUGCuGGCGGGGUg--GUUGaa---CGUC- -5'
6777 5' -54.8 NC_001875.2 + 47497 0.67 0.892343
Target:  5'- cCGGCGcaGCCGCUCCGCCA-CUcGCc- -3'
miRNA:   3'- aGUUGC--UGGCGGGGUGGUuGAaCGuc -5'
6777 5' -54.8 NC_001875.2 + 3183 0.67 0.892343
Target:  5'- cCGGCGGCCGCgCaCCAgagaCAGgUUGCGGc -3'
miRNA:   3'- aGUUGCUGGCG-G-GGUg---GUUgAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 92533 0.67 0.892343
Target:  5'- cCGGCGcguuuucuCUGCa-CACCAACUUGCGGa -3'
miRNA:   3'- aGUUGCu-------GGCGggGUGGUUGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 28943 0.67 0.892343
Target:  5'- uUCAACGGCCGgCC-GCuCAAUgUGCGGu -3'
miRNA:   3'- -AGUUGCUGGCgGGgUG-GUUGaACGUC- -5'
6777 5' -54.8 NC_001875.2 + 94833 0.67 0.892343
Target:  5'- gCAGCGugCGCUgCAUCA--UUGCGGc -3'
miRNA:   3'- aGUUGCugGCGGgGUGGUugAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 131461 0.67 0.891661
Target:  5'- uUCAACGcuggccgagcacaAUCGCgCgGCCAACgUGCAGa -3'
miRNA:   3'- -AGUUGC-------------UGGCGgGgUGGUUGaACGUC- -5'
6777 5' -54.8 NC_001875.2 + 7119 0.67 0.885418
Target:  5'- aCAuUGACCGCCaCgCGCCG-CUUGcCAGg -3'
miRNA:   3'- aGUuGCUGGCGG-G-GUGGUuGAAC-GUC- -5'
6777 5' -54.8 NC_001875.2 + 99939 0.67 0.88115
Target:  5'- gCAGCG-CgGCCaaguuuacaaaacggUCGCCAACUUGCAa -3'
miRNA:   3'- aGUUGCuGgCGG---------------GGUGGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 115444 0.67 0.878259
Target:  5'- gCGACGAacaCCGCaCCUACCGcguugaGCUaGCGGg -3'
miRNA:   3'- aGUUGCU---GGCG-GGGUGGU------UGAaCGUC- -5'
6777 5' -54.8 NC_001875.2 + 13090 0.67 0.878259
Target:  5'- -gAGCaGGCCG-CCCACCAugUgccGCAGc -3'
miRNA:   3'- agUUG-CUGGCgGGGUGGUugAa--CGUC- -5'
6777 5' -54.8 NC_001875.2 + 39961 0.67 0.870872
Target:  5'- cCGACccGCCGCCgCACCAGCagGCGc -3'
miRNA:   3'- aGUUGc-UGGCGGgGUGGUUGaaCGUc -5'
6777 5' -54.8 NC_001875.2 + 69231 0.67 0.870872
Target:  5'- -gGGCGACgCGCgCUguGCCGACUUGCc- -3'
miRNA:   3'- agUUGCUG-GCGgGG--UGGUUGAACGuc -5'
6777 5' -54.8 NC_001875.2 + 115757 0.67 0.870872
Target:  5'- gCGGCGugCGCCaaACCGGCgccgugUGCGu -3'
miRNA:   3'- aGUUGCugGCGGggUGGUUGa-----ACGUc -5'
6777 5' -54.8 NC_001875.2 + 73756 0.67 0.870872
Target:  5'- aCAACGugCGCacgcgccagaCCGCCGACagcGCGGu -3'
miRNA:   3'- aGUUGCugGCGg---------GGUGGUUGaa-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.