miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 3' -58.5 NC_001875.2 + 40834 0.68 0.636388
Target:  5'- -cGGCcgugGGCAAGacGGCGCUCGCcaAGACg -3'
miRNA:   3'- caUCG----CCGUUCa-CCGCGGGCGa-UCUG- -5'
6778 3' -58.5 NC_001875.2 + 63262 0.68 0.636388
Target:  5'- -cGGCGGCcAGcGGCGCCaCGCggugcgcGACc -3'
miRNA:   3'- caUCGCCGuUCaCCGCGG-GCGau-----CUG- -5'
6778 3' -58.5 NC_001875.2 + 70196 0.68 0.61577
Target:  5'- -gGGCGGCGAcGgcgaccacugGGCGCCCG--AGGCg -3'
miRNA:   3'- caUCGCCGUU-Ca---------CCGCGGGCgaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 130117 0.68 0.61577
Target:  5'- -cGGCGGCGcgaccGGUGucGCGCCCGCa---- -3'
miRNA:   3'- caUCGCCGU-----UCAC--CGCGGGCGaucug -5'
6778 3' -58.5 NC_001875.2 + 36825 0.68 0.61577
Target:  5'- --cGCGGCAGuUGcGCGCCCGCg---- -3'
miRNA:   3'- cauCGCCGUUcAC-CGCGGGCGaucug -5'
6778 3' -58.5 NC_001875.2 + 99621 0.68 0.605476
Target:  5'- uUGGCGuucuGCAAGUGGCGCaaGUUgaagGGGCa -3'
miRNA:   3'- cAUCGC----CGUUCACCGCGggCGA----UCUG- -5'
6778 3' -58.5 NC_001875.2 + 33468 0.68 0.605476
Target:  5'- -cAGUGGUcgaAAGUGGCGCgCCGCgcgcugGGGu -3'
miRNA:   3'- caUCGCCG---UUCACCGCG-GGCGa-----UCUg -5'
6778 3' -58.5 NC_001875.2 + 79252 0.68 0.595202
Target:  5'- -aAGCuGguGGUGGCGCgCGUggAGACg -3'
miRNA:   3'- caUCGcCguUCACCGCGgGCGa-UCUG- -5'
6778 3' -58.5 NC_001875.2 + 128952 0.68 0.595202
Target:  5'- -gAGCGGCuaa-GGCGUgaGCUGGGCg -3'
miRNA:   3'- caUCGCCGuucaCCGCGggCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 44112 0.68 0.59315
Target:  5'- gGUGGCGGCGAGUuguccgcgguuuGCGUCCGC-GGAg -3'
miRNA:   3'- -CAUCGCCGUUCAc-----------CGCGGGCGaUCUg -5'
6778 3' -58.5 NC_001875.2 + 38753 0.69 0.584956
Target:  5'- -aAGCGGguAGgugaagucGGCGuCCUGUUGGGCg -3'
miRNA:   3'- caUCGCCguUCa-------CCGC-GGGCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 116918 0.69 0.574744
Target:  5'- --cGCGGCGGGUGGCGCacaaugaCG-UAGAg -3'
miRNA:   3'- cauCGCCGUUCACCGCGg------GCgAUCUg -5'
6778 3' -58.5 NC_001875.2 + 33143 0.69 0.564574
Target:  5'- aUGGCGGCAGGgcaacagcacGGCGUCgCGCUgccgcucgAGGCa -3'
miRNA:   3'- cAUCGCCGUUCa---------CCGCGG-GCGA--------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 86247 0.69 0.564574
Target:  5'- --uGCGcGCcgGAGUcGG-GCCCGCUGGACu -3'
miRNA:   3'- cauCGC-CG--UUCA-CCgCGGGCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 57008 0.69 0.564574
Target:  5'- -cAGCGGUccgucaaugGAGUGuaaCGCgCCGCUGGGCg -3'
miRNA:   3'- caUCGCCG---------UUCACc--GCG-GGCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 119056 0.69 0.554451
Target:  5'- -cGGCGuGCGcauGUgcgcGGCGCCCcgGCUGGACa -3'
miRNA:   3'- caUCGC-CGUu--CA----CCGCGGG--CGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 66026 0.69 0.554451
Target:  5'- -cAGCuGCAAGcgcuUGGCGCCgCGC-AGGCa -3'
miRNA:   3'- caUCGcCGUUC----ACCGCGG-GCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 98753 0.69 0.544383
Target:  5'- uUAGaCGGCAAGUGcccgacGUGCCgGCaAGACg -3'
miRNA:   3'- cAUC-GCCGUUCAC------CGCGGgCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 61587 0.69 0.544383
Target:  5'- uUAGCGGCGAcGgcucgGGCGCCggcggCGCUucGGGCu -3'
miRNA:   3'- cAUCGCCGUU-Ca----CCGCGG-----GCGA--UCUG- -5'
6778 3' -58.5 NC_001875.2 + 34968 0.7 0.524433
Target:  5'- --cGgGGCAGcUGGacCGCCCGCUAGAa -3'
miRNA:   3'- cauCgCCGUUcACC--GCGGGCGAUCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.