miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 5' -52.9 NC_001875.2 + 111169 0.66 0.943426
Target:  5'- gCGcUGCuuAGCGauuuucuuGGGCGCGCuGGGCGGCGc -3'
miRNA:   3'- -GCuAUG--UCGU--------UCCGCGUG-UUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 23256 0.66 0.943426
Target:  5'- aGA-ACAGCGacGGGCaGCGCAGcGcCAGCAc -3'
miRNA:   3'- gCUaUGUCGU--UCCG-CGUGUU-C-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 83208 0.66 0.943426
Target:  5'- ----cCAGCGAcuGGCuGCGCAgcAGCGGCAc -3'
miRNA:   3'- gcuauGUCGUU--CCG-CGUGU--UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 113606 0.66 0.943426
Target:  5'- uCGAgucgGCGGCGGgccgcGGCgGCAaGAGCGGCGa -3'
miRNA:   3'- -GCUa---UGUCGUU-----CCG-CGUgUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 32103 0.66 0.943426
Target:  5'- ---cACAGCAcgagcacgacaAGGCGCGCAcuuGCgAGCGc -3'
miRNA:   3'- gcuaUGUCGU-----------UCCGCGUGUu--CG-UCGU- -5'
6778 5' -52.9 NC_001875.2 + 102371 0.66 0.943426
Target:  5'- uCGuc-CAGCAuGGCGCGCAAcucuuuCAGCAa -3'
miRNA:   3'- -GCuauGUCGUuCCGCGUGUUc-----GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 88358 0.66 0.94295
Target:  5'- -uGUGCAGCGugcacgggcaaaaGGGCGUGCucaaccGCAGCGa -3'
miRNA:   3'- gcUAUGUCGU-------------UCCGCGUGuu----CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 107706 0.66 0.938557
Target:  5'- gCGAccuUAUAGC-GGGCGCGCAGG--GCAa -3'
miRNA:   3'- -GCU---AUGUCGuUCCGCGUGUUCguCGU- -5'
6778 5' -52.9 NC_001875.2 + 94805 0.66 0.938557
Target:  5'- -cGUGCAGCGccGUGCACGGccauaaauuGCAGCGu -3'
miRNA:   3'- gcUAUGUCGUucCGCGUGUU---------CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 107649 0.66 0.938557
Target:  5'- gCGccACAGUuGGGCaaACAAGUAGCAa -3'
miRNA:   3'- -GCuaUGUCGuUCCGcgUGUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 65132 0.66 0.938557
Target:  5'- -cGUGCAGUacauggugucgGAGGCGguCAcguGCAGCAu -3'
miRNA:   3'- gcUAUGUCG-----------UUCCGCguGUu--CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 90006 0.66 0.938557
Target:  5'- gCGGcGCGGCAAcuGGaCGCGCAAcuggccGCGGCGc -3'
miRNA:   3'- -GCUaUGUCGUU--CC-GCGUGUU------CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 74295 0.66 0.938056
Target:  5'- gCGA-ACAGCGcaucgccuacGGCGCGCAGGCgccggacAGCAc -3'
miRNA:   3'- -GCUaUGUCGUu---------CCGCGUGUUCG-------UCGU- -5'
6778 5' -52.9 NC_001875.2 + 120300 0.67 0.933427
Target:  5'- gCGAUGCAaCAAGGUGCGCAccgucaccgaAGUcaAGCc -3'
miRNA:   3'- -GCUAUGUcGUUCCGCGUGU----------UCG--UCGu -5'
6778 5' -52.9 NC_001875.2 + 50831 0.67 0.933427
Target:  5'- aGAccgGCAGCAAcGCGuCGCGcgccuuuuucAGCAGCAg -3'
miRNA:   3'- gCUa--UGUCGUUcCGC-GUGU----------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 13732 0.67 0.933427
Target:  5'- ---gGCGGCAAugcGGuUGCGCAGGCGGUc -3'
miRNA:   3'- gcuaUGUCGUU---CC-GCGUGUUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 89959 0.67 0.933427
Target:  5'- uGGcGCGGCGacAGGUGUuggACGAGCAGUu -3'
miRNA:   3'- gCUaUGUCGU--UCCGCG---UGUUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 77274 0.67 0.933427
Target:  5'- uCGGUGCAGguGGaccCGCAaacgGAGCAGCu -3'
miRNA:   3'- -GCUAUGUCguUCc--GCGUg---UUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 38443 0.67 0.933427
Target:  5'- aCGAaaGCAGCAAgugccGGCGCGCGcuagaauugguGCAGCGc -3'
miRNA:   3'- -GCUa-UGUCGUU-----CCGCGUGUu----------CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 43309 0.67 0.933427
Target:  5'- gGGUAgCGGCGc-GCGCGCGGGuCGGCGu -3'
miRNA:   3'- gCUAU-GUCGUucCGCGUGUUC-GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.