miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 3' -49.7 NC_001875.2 + 94733 0.66 0.989715
Target:  5'- --cGGCGCGgc-GCCGCGCCcgCaCAc -3'
miRNA:   3'- uuuUCGUGUaauUGGCGCGGuaG-GUc -5'
6779 3' -49.7 NC_001875.2 + 46629 0.67 0.988842
Target:  5'- --cGGCGCu---ACCGCGCggcggcccgucggcuCAUCCAGu -3'
miRNA:   3'- uuuUCGUGuaauUGGCGCG---------------GUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 58966 0.67 0.988229
Target:  5'- uGAGGC-CGUUGGCCGC-CCAaUCGGa -3'
miRNA:   3'- uUUUCGuGUAAUUGGCGcGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 91490 0.67 0.988229
Target:  5'- aAGGAGUugAUgaggUAGCCauacgcGCGCaCGUCCAGg -3'
miRNA:   3'- -UUUUCGugUA----AUUGG------CGCG-GUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 70332 0.67 0.988229
Target:  5'- -cGAGCACGcgGACUgcgGCGCCGagCCGGc -3'
miRNA:   3'- uuUUCGUGUaaUUGG---CGCGGUa-GGUC- -5'
6779 3' -49.7 NC_001875.2 + 91624 0.67 0.988229
Target:  5'- ---cGCGCGUUucGCCgGCGCCAauuUCCGu -3'
miRNA:   3'- uuuuCGUGUAAu-UGG-CGCGGU---AGGUc -5'
6779 3' -49.7 NC_001875.2 + 124959 0.67 0.988229
Target:  5'- gGAAAGCuCuguUUGACCGCGUCG-CCGc -3'
miRNA:   3'- -UUUUCGuGu--AAUUGGCGCGGUaGGUc -5'
6779 3' -49.7 NC_001875.2 + 129170 0.67 0.986583
Target:  5'- gAAucGUuCGUaAACCGCGUCAUCUGGg -3'
miRNA:   3'- -UUuuCGuGUAaUUGGCGCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 104492 0.67 0.986583
Target:  5'- -uGAGcCGCAUgaugcgAGCCGgcgaaaCGCCGUCCGGc -3'
miRNA:   3'- uuUUC-GUGUAa-----UUGGC------GCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 121388 0.67 0.986583
Target:  5'- -uGAGCGCGcc-GCCGCGCCGcgUCAa -3'
miRNA:   3'- uuUUCGUGUaauUGGCGCGGUa-GGUc -5'
6779 3' -49.7 NC_001875.2 + 64763 0.67 0.984765
Target:  5'- ---cGCGCGUaGAUcucgCGCGCCAgcUCCAGc -3'
miRNA:   3'- uuuuCGUGUAaUUG----GCGCGGU--AGGUC- -5'
6779 3' -49.7 NC_001875.2 + 61016 0.67 0.984765
Target:  5'- cGAA-CGCuUUAGCCGCGCUcgCCAa -3'
miRNA:   3'- uUUUcGUGuAAUUGGCGCGGuaGGUc -5'
6779 3' -49.7 NC_001875.2 + 34771 0.67 0.984765
Target:  5'- -uGAGCACGacgUggUC-CGCCAUCCAc -3'
miRNA:   3'- uuUUCGUGUa--AuuGGcGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 7113 0.67 0.984765
Target:  5'- --uGGCcgACAUUGACCgccacGCGCCGcuugCCAGg -3'
miRNA:   3'- uuuUCG--UGUAAUUGG-----CGCGGUa---GGUC- -5'
6779 3' -49.7 NC_001875.2 + 43116 0.67 0.982766
Target:  5'- --cGGCAgGUUGgaGCCGcCGCgCAUCCAc -3'
miRNA:   3'- uuuUCGUgUAAU--UGGC-GCG-GUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 94495 0.67 0.982766
Target:  5'- -cGAGCGCGc-GGCCGCGCgcaaaGUCCAc -3'
miRNA:   3'- uuUUCGUGUaaUUGGCGCGg----UAGGUc -5'
6779 3' -49.7 NC_001875.2 + 95727 0.67 0.982766
Target:  5'- cGAAGUGCAUgAGCgGCGCCG-CCGc -3'
miRNA:   3'- uUUUCGUGUAaUUGgCGCGGUaGGUc -5'
6779 3' -49.7 NC_001875.2 + 11200 0.67 0.980575
Target:  5'- uGGAGCACGac-GCCGCGCCGgaCgAGa -3'
miRNA:   3'- uUUUCGUGUaauUGGCGCGGUa-GgUC- -5'
6779 3' -49.7 NC_001875.2 + 48364 0.68 0.978182
Target:  5'- --cAGCGCGcUAAUCGCGCgccCGUCCGa -3'
miRNA:   3'- uuuUCGUGUaAUUGGCGCG---GUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 33445 0.68 0.978182
Target:  5'- -uGAGCGCGUUcAgCGCGgCCggCCAGu -3'
miRNA:   3'- uuUUCGUGUAAuUgGCGC-GGuaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.