miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 5' -57.7 NC_001875.2 + 40390 0.66 0.819435
Target:  5'- gGACAuGcGCGcccACGCGCCGCCgcucaGCu -3'
miRNA:   3'- -CUGUuC-CGC---UGCGCGGCGGacaagCG- -5'
6779 5' -57.7 NC_001875.2 + 120835 0.66 0.819435
Target:  5'- aGGCAcaccauGGGC-ACGCG-CGCCUGcagCGCu -3'
miRNA:   3'- -CUGU------UCCGcUGCGCgGCGGACaa-GCG- -5'
6779 5' -57.7 NC_001875.2 + 5919 0.66 0.819435
Target:  5'- cGGCAuGGCGuuggguaGCGCCGCgCagGUgggCGCg -3'
miRNA:   3'- -CUGUuCCGCug-----CGCGGCG-Ga-CAa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 119912 0.66 0.814266
Target:  5'- cACAGucGGCGcgccGCGCgcaaaacaccugcucGCCGCC-GUUCGCg -3'
miRNA:   3'- cUGUU--CCGC----UGCG---------------CGGCGGaCAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 47988 0.66 0.810786
Target:  5'- aGCGGGGCGuCGaGCCGcCCUGgaaccagaUCGUg -3'
miRNA:   3'- cUGUUCCGCuGCgCGGC-GGACa-------AGCG- -5'
6779 5' -57.7 NC_001875.2 + 74266 0.66 0.810786
Target:  5'- gGACAGcGCGACGC-CgCGCCgGUUuaCGCg -3'
miRNA:   3'- -CUGUUcCGCUGCGcG-GCGGaCAA--GCG- -5'
6779 5' -57.7 NC_001875.2 + 81801 0.66 0.810786
Target:  5'- aGACA--GCGACGgGCCGgCCgccUCGCc -3'
miRNA:   3'- -CUGUucCGCUGCgCGGC-GGacaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 43317 0.66 0.810786
Target:  5'- cGACGccgcGGCgGGCGUGCCGCUgauugUGUuuUUGCa -3'
miRNA:   3'- -CUGUu---CCG-CUGCGCGGCGG-----ACA--AGCG- -5'
6779 5' -57.7 NC_001875.2 + 83901 0.66 0.810786
Target:  5'- ----cGGUGucCGCGCaCGCCUGUU-GCa -3'
miRNA:   3'- cuguuCCGCu-GCGCG-GCGGACAAgCG- -5'
6779 5' -57.7 NC_001875.2 + 129163 0.66 0.809912
Target:  5'- -cCGAGGCGccgcaguugccccAgGCGCCGCCgg--CGCc -3'
miRNA:   3'- cuGUUCCGC-------------UgCGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 114933 0.66 0.801976
Target:  5'- cACGAGGCc-CGCGCCGUCg--UCGa -3'
miRNA:   3'- cUGUUCCGcuGCGCGGCGGacaAGCg -5'
6779 5' -57.7 NC_001875.2 + 125286 0.66 0.801976
Target:  5'- -uCGGGGUacaccuuguuGACGCGCCGCaaGUUgGUa -3'
miRNA:   3'- cuGUUCCG----------CUGCGCGGCGgaCAAgCG- -5'
6779 5' -57.7 NC_001875.2 + 65794 0.66 0.801976
Target:  5'- cGGCGucGGCG-CGCGgUGCCUG--CGCg -3'
miRNA:   3'- -CUGUu-CCGCuGCGCgGCGGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 43324 0.66 0.801976
Target:  5'- cGCGGgucGGCGugGuUGCCGCCg---CGCa -3'
miRNA:   3'- cUGUU---CCGCugC-GCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 8513 0.66 0.801976
Target:  5'- --aAGGGCGuGCGCuCUGCCUGcgCGUc -3'
miRNA:   3'- cugUUCCGC-UGCGcGGCGGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 36588 0.66 0.801976
Target:  5'- uGCAAaauGCGGCGCaGCCGCUgcgcgUCGCc -3'
miRNA:   3'- cUGUUc--CGCUGCG-CGGCGGaca--AGCG- -5'
6779 5' -57.7 NC_001875.2 + 82387 0.66 0.793013
Target:  5'- aACGcGGCGAC-CGUCGCUgagUCGCu -3'
miRNA:   3'- cUGUuCCGCUGcGCGGCGGacaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 83591 0.66 0.793013
Target:  5'- ----cGGCGGgGCGCCGCCgua--GCu -3'
miRNA:   3'- cuguuCCGCUgCGCGGCGGacaagCG- -5'
6779 5' -57.7 NC_001875.2 + 111190 0.66 0.793013
Target:  5'- gGGCGcgcuGGGCGGCGCGC-GCCguuuuuugUUGCu -3'
miRNA:   3'- -CUGU----UCCGCUGCGCGgCGGaca-----AGCG- -5'
6779 5' -57.7 NC_001875.2 + 88283 0.66 0.793013
Target:  5'- uGACGcuggcGGGCGACGCGgUGaUUGUcCGCa -3'
miRNA:   3'- -CUGU-----UCCGCUGCGCgGCgGACAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.