miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 2648 0.7 0.623889
Target:  5'- aCGgacACGuCUACUUGc--GGCGCCGGCg -3'
miRNA:   3'- gGC---UGCuGGUGAACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 59595 0.7 0.63196
Target:  5'- gCCGACGugCGCgagcacgGGCGCUuuGGCg -3'
miRNA:   3'- -GGCUGCugGUGaaccaa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 97887 0.7 0.674244
Target:  5'- gCCGcACGGgCACgUUGcg-GGCGUCGGCg -3'
miRNA:   3'- -GGC-UGCUgGUG-AACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 40191 0.7 0.648099
Target:  5'- aCUGGaacCCGCU-GGUgcccaucacggaaauUGGCGCCGGCg -3'
miRNA:   3'- -GGCUgcuGGUGAaCCA---------------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 100587 0.7 0.644066
Target:  5'- gUCGACGcgUACgcgGGccgGGCGCCGGCc -3'
miRNA:   3'- -GGCUGCugGUGaa-CCaa-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 42744 0.7 0.664207
Target:  5'- gCGGCGACgCGCaUGGUgagcGGCGCgcucggguCGGCc -3'
miRNA:   3'- gGCUGCUG-GUGaACCAa---CCGCG--------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 40097 0.7 0.674244
Target:  5'- gCUGACGcGCCAC-UGGcUGGCGCUGu- -3'
miRNA:   3'- -GGCUGC-UGGUGaACCaACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 31688 0.7 0.674244
Target:  5'- gCCGGCGuggaccGCCGCUUGcgcGcCGCCGGCg -3'
miRNA:   3'- -GGCUGC------UGGUGAACcaaCcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 88333 0.69 0.684247
Target:  5'- aCCGACGACC---UGGagGGCGUCaaGGUg -3'
miRNA:   3'- -GGCUGCUGGugaACCaaCCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 131723 0.69 0.684247
Target:  5'- gCCGAcaCGACUAUUuugaaUGGUgcauUGG-GCCGGCg -3'
miRNA:   3'- -GGCU--GCUGGUGA-----ACCA----ACCgCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 11614 0.69 0.684247
Target:  5'- gCGGCGugGCCACgaaugGGUUGGCGC--GCa -3'
miRNA:   3'- gGCUGC--UGGUGaa---CCAACCGCGgcCG- -5'
6780 3' -57.2 NC_001875.2 + 11077 0.69 0.694208
Target:  5'- gCGACGAgCACUUcgcGGUUGGaCGUUuggGGCu -3'
miRNA:   3'- gGCUGCUgGUGAA---CCAACC-GCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 110621 0.69 0.723756
Target:  5'- aCGugGugCGgUuuaaacacaaccUGG-UGGCGCUGGCc -3'
miRNA:   3'- gGCugCugGUgA------------ACCaACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 55337 0.69 0.723756
Target:  5'- aUGACGcGCCGCUUcGggGGCGCCGc- -3'
miRNA:   3'- gGCUGC-UGGUGAAcCaaCCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 9791 0.69 0.733463
Target:  5'- uCCGGgGugUACUUGcacGGCGCCaucGGCg -3'
miRNA:   3'- -GGCUgCugGUGAACcaaCCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 22715 0.69 0.733463
Target:  5'- gUCGuCG-CCACUgUGGccuacUUGuGCGCCGGCc -3'
miRNA:   3'- -GGCuGCuGGUGA-ACC-----AAC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 95350 0.69 0.733463
Target:  5'- aCCGGCGGCgCACgUGcac-GCGUCGGCg -3'
miRNA:   3'- -GGCUGCUG-GUGaACcaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119054 0.69 0.70412
Target:  5'- uCCGGCGugCGCaUGuGcgcGGCGCCccGGCu -3'
miRNA:   3'- -GGCUGCugGUGaAC-Caa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 38499 0.69 0.684247
Target:  5'- cCCGACGACaa---GG-UGGUGCUGGUg -3'
miRNA:   3'- -GGCUGCUGgugaaCCaACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 39150 0.69 0.70412
Target:  5'- aUGAUGGCCAuUUUGGggccgcgaGGCggGCCGGCg -3'
miRNA:   3'- gGCUGCUGGU-GAACCaa------CCG--CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.