miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 55337 0.69 0.723756
Target:  5'- aUGACGcGCCGCUUcGggGGCGCCGc- -3'
miRNA:   3'- gGCUGC-UGGUGAAcCaaCCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 110621 0.69 0.723756
Target:  5'- aCGugGugCGgUuuaaacacaaccUGG-UGGCGCUGGCc -3'
miRNA:   3'- gGCugCugGUgA------------ACCaACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 39150 0.69 0.70412
Target:  5'- aUGAUGGCCAuUUUGGggccgcgaGGCggGCCGGCg -3'
miRNA:   3'- gGCUGCUGGU-GAACCaa------CCG--CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119054 0.69 0.70412
Target:  5'- uCCGGCGugCGCaUGuGcgcGGCGCCccGGCu -3'
miRNA:   3'- -GGCUGCugGUGaAC-Caa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 13149 0.68 0.743085
Target:  5'- gCGAcaCGACCACgcGGUaGGCGUcgccgaacaCGGCg -3'
miRNA:   3'- gGCU--GCUGGUGaaCCAaCCGCG---------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 29271 0.68 0.770424
Target:  5'- gCCGcCGACCGCgccGGcggGGCGCggucgugUGGCg -3'
miRNA:   3'- -GGCuGCUGGUGaa-CCaa-CCGCG-------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 7379 0.68 0.77135
Target:  5'- gCCGGauCGGCCACgcGGUUGcGCGaCgCGGUc -3'
miRNA:   3'- -GGCU--GCUGGUGaaCCAAC-CGC-G-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 124982 0.68 0.789605
Target:  5'- gCCGcGCGuCCGCUUuacgugcaaGUUGGCGUCGGg -3'
miRNA:   3'- -GGC-UGCuGGUGAAc--------CAACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 11981 0.68 0.789605
Target:  5'- aCUGGCGACgGCgUUGGgcgcgGGUGUggUGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-AACCaa---CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 62525 0.68 0.789605
Target:  5'- uUGACGuCgACUUGGacgcUUGcGCGuuGGCa -3'
miRNA:   3'- gGCUGCuGgUGAACC----AAC-CGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 75358 0.68 0.789605
Target:  5'- aUGGCGuCgGCgUUGGUgaUGGCGuuGGUg -3'
miRNA:   3'- gGCUGCuGgUG-AACCA--ACCGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 111063 0.68 0.789605
Target:  5'- gUCGACGGCUucuACgUGGacGaCGCCGGCg -3'
miRNA:   3'- -GGCUGCUGG---UGaACCaaCcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 128648 0.68 0.789605
Target:  5'- gCCGcCGcaACCugUcucUGGUgcgcGGcCGCCGGCu -3'
miRNA:   3'- -GGCuGC--UGGugA---ACCAa---CC-GCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 84364 0.68 0.789605
Target:  5'- gCCGguaggugcGCGGCCuGCcgGGgcGGCGUCGGUa -3'
miRNA:   3'- -GGC--------UGCUGG-UGaaCCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 24098 0.68 0.789605
Target:  5'- --uGCGGCCuguaaaaauuACUauugauUGGUUGGCGCaaaGGCg -3'
miRNA:   3'- ggcUGCUGG----------UGA------ACCAACCGCGg--CCG- -5'
6780 3' -57.2 NC_001875.2 + 873 0.68 0.780543
Target:  5'- uCCGuuGACCACUUug--GGCGCgagaaCGGCg -3'
miRNA:   3'- -GGCugCUGGUGAAccaaCCGCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 30639 0.68 0.77135
Target:  5'- gCCGuCGACaaACggcaaGUUgGGCGCCGGCa -3'
miRNA:   3'- -GGCuGCUGg-UGaac--CAA-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 98325 0.68 0.77135
Target:  5'- uCCGuucaACGugCACau-GUUGGCGCugCGGCa -3'
miRNA:   3'- -GGC----UGCugGUGaacCAACCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 102430 0.68 0.77135
Target:  5'- gCCGuugcCGAgCGCcgGGUUGGCGCCcuuGCc -3'
miRNA:   3'- -GGCu---GCUgGUGaaCCAACCGCGGc--CG- -5'
6780 3' -57.2 NC_001875.2 + 61537 0.68 0.789605
Target:  5'- uUGGCGGCCAUcaugUGGgacacgGuGCGuuGGCa -3'
miRNA:   3'- gGCUGCUGGUGa---ACCaa----C-CGCggCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.