miRNA display CGI


Results 81 - 100 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 111063 0.68 0.789605
Target:  5'- gUCGACGGCUucuACgUGGacGaCGCCGGCg -3'
miRNA:   3'- -GGCUGCUGG---UGaACCaaCcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 128648 0.68 0.789605
Target:  5'- gCCGcCGcaACCugUcucUGGUgcgcGGcCGCCGGCu -3'
miRNA:   3'- -GGCuGC--UGGugA---ACCAa---CC-GCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 84364 0.68 0.789605
Target:  5'- gCCGguaggugcGCGGCCuGCcgGGgcGGCGUCGGUa -3'
miRNA:   3'- -GGC--------UGCUGG-UGaaCCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 124982 0.68 0.789605
Target:  5'- gCCGcGCGuCCGCUUuacgugcaaGUUGGCGUCGGg -3'
miRNA:   3'- -GGC-UGCuGGUGAAc--------CAACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 11981 0.68 0.789605
Target:  5'- aCUGGCGACgGCgUUGGgcgcgGGUGUggUGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-AACCaa---CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 61537 0.68 0.789605
Target:  5'- uUGGCGGCCAUcaugUGGgacacgGuGCGuuGGCa -3'
miRNA:   3'- gGCUGCUGGUGa---ACCaa----C-CGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 24098 0.68 0.789605
Target:  5'- --uGCGGCCuguaaaaauuACUauugauUGGUUGGCGCaaaGGCg -3'
miRNA:   3'- ggcUGCUGG----------UGA------ACCAACCGCGg--CCG- -5'
6780 3' -57.2 NC_001875.2 + 30639 0.68 0.77135
Target:  5'- gCCGuCGACaaACggcaaGUUgGGCGCCGGCa -3'
miRNA:   3'- -GGCuGCUGg-UGaac--CAA-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 98325 0.68 0.77135
Target:  5'- uCCGuucaACGugCACau-GUUGGCGCugCGGCa -3'
miRNA:   3'- -GGC----UGCugGUGaacCAACCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 102430 0.68 0.77135
Target:  5'- gCCGuugcCGAgCGCcgGGUUGGCGCCcuuGCc -3'
miRNA:   3'- -GGCu---GCUgGUGaaCCAACCGCGGc--CG- -5'
6780 3' -57.2 NC_001875.2 + 32471 0.68 0.752613
Target:  5'- gCGGCGcuuugGCCACUUGGcgGGCGCgcccaaguugcgCGGa -3'
miRNA:   3'- gGCUGC-----UGGUGAACCaaCCGCG------------GCCg -5'
6780 3' -57.2 NC_001875.2 + 20282 0.68 0.752613
Target:  5'- aCGACGcuugugGCCACgccgGGgaacuggUGGUGCUGGUc -3'
miRNA:   3'- gGCUGC------UGGUGaa--CCa------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 129966 0.68 0.743085
Target:  5'- gCGGCGGCgGCggcGGc-GGCGgCGGCa -3'
miRNA:   3'- gGCUGCUGgUGaa-CCaaCCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 62525 0.68 0.789605
Target:  5'- uUGACGuCgACUUGGacgcUUGcGCGuuGGCa -3'
miRNA:   3'- gGCUGCuGgUGAACC----AAC-CGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 112710 0.68 0.743085
Target:  5'- gCUGACGgcGCCGCcgUGGUaGGCGCguCGcGCg -3'
miRNA:   3'- -GGCUGC--UGGUGa-ACCAaCCGCG--GC-CG- -5'
6780 3' -57.2 NC_001875.2 + 12842 0.68 0.740208
Target:  5'- cCCGGCGGCgccggcuagCACgcagccgUGGUUGGUcguguuggcaaacaGCCGGUu -3'
miRNA:   3'- -GGCUGCUG---------GUGa------ACCAACCG--------------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 122760 0.67 0.807309
Target:  5'- gCCGACucGCCACaggcgcaGUUGGCGgaaaCCGGCg -3'
miRNA:   3'- -GGCUGc-UGGUGaac----CAACCGC----GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 69208 0.67 0.815933
Target:  5'- gCCGACGGCCaguacGCUUGuucgGGCGaCGcGCg -3'
miRNA:   3'- -GGCUGCUGG-----UGAACcaa-CCGCgGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 8229 0.67 0.79853
Target:  5'- gUCGAcuuCGAUCACUUuuuugGGCaGCCGGCg -3'
miRNA:   3'- -GGCU---GCUGGUGAAccaa-CCG-CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 111848 0.67 0.80206
Target:  5'- gCCGGCcaggugucuGGCCACgcacgucagcaacGGcgaGGCGCCGGCc -3'
miRNA:   3'- -GGCUG---------CUGGUGaa-----------CCaa-CCGCGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.