miRNA display CGI


Results 101 - 120 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 69208 0.67 0.815933
Target:  5'- gCCGACGGCCaguacGCUUGuucgGGCGaCGcGCg -3'
miRNA:   3'- -GGCUGCUGG-----UGAACcaa-CCGCgGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 90967 0.67 0.815933
Target:  5'- gCGcGCGugCACcaGGaUGGCGCCcGCg -3'
miRNA:   3'- gGC-UGCugGUGaaCCaACCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 122760 0.67 0.807309
Target:  5'- gCCGACucGCCACaggcgcaGUUGGCGgaaaCCGGCg -3'
miRNA:   3'- -GGCUGc-UGGUGaac----CAACCGC----GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 111848 0.67 0.80206
Target:  5'- gCCGGCcaggugucuGGCCACgcacgucagcaacGGcgaGGCGCCGGCc -3'
miRNA:   3'- -GGCUG---------CUGGUGaa-----------CCaa-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 8229 0.67 0.79853
Target:  5'- gUCGAcuuCGAUCACUUuuuugGGCaGCCGGCg -3'
miRNA:   3'- -GGCU---GCUGGUGAAccaa-CCG-CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 94402 0.67 0.832687
Target:  5'- gCGGCGGCUAUUUGGccgccgacuGCGCCacGGCc -3'
miRNA:   3'- gGCUGCUGGUGAACCaac------CGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 90003 0.67 0.79853
Target:  5'- gCCGcggcGCGGCaACUggacgcgcaacUGGccgcGGCGCCGGCg -3'
miRNA:   3'- -GGC----UGCUGgUGA-----------ACCaa--CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 41140 0.67 0.832687
Target:  5'- aCCGGCGGCC---------GCGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGugaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119536 0.67 0.832687
Target:  5'- gCGuuGACCACgcacacGGcgGcGUGCCGGCu -3'
miRNA:   3'- gGCugCUGGUGaa----CCaaC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 115907 0.67 0.832687
Target:  5'- gCUGGCGccccGCCAgCUgGGUcauguugccGGUGCCGGCa -3'
miRNA:   3'- -GGCUGC----UGGU-GAaCCAa--------CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 113667 0.67 0.832687
Target:  5'- gCCGGCaccGCCACagUGGc-GGCGUCGcGCg -3'
miRNA:   3'- -GGCUGc--UGGUGa-ACCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 114027 0.66 0.878485
Target:  5'- aUGGCGGCCGCgcGGUccagaUGGUagcacGCgGGCu -3'
miRNA:   3'- gGCUGCUGGUGaaCCA-----ACCG-----CGgCCG- -5'
6780 3' -57.2 NC_001875.2 + 109846 0.66 0.878485
Target:  5'- gCCGGCGgauuuGCUGCgcGcGUuugccaagcUGGCGCUGGCg -3'
miRNA:   3'- -GGCUGC-----UGGUGaaC-CA---------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 65434 0.66 0.878485
Target:  5'- uCCGGCGugCACc--GcUGGCGgUCGGUg -3'
miRNA:   3'- -GGCUGCugGUGaacCaACCGC-GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 68699 0.66 0.871354
Target:  5'- cCCGugGACC-Cgu-----GCGCCGGCc -3'
miRNA:   3'- -GGCugCUGGuGaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 10664 0.66 0.871354
Target:  5'- gCGGCGGacugCACUUGGcgcaGGCGCUGccGCa -3'
miRNA:   3'- gGCUGCUg---GUGAACCaa--CCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 111771 0.66 0.86771
Target:  5'- gCCGACGACUggugucgcuggugACggcGGUgcacgcggccgacGGCGCCuGGCu -3'
miRNA:   3'- -GGCUGCUGG-------------UGaa-CCAa------------CCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 10865 0.66 0.864015
Target:  5'- aCGACGcggugGCCGCgucGG-UGGCGCUGccGCg -3'
miRNA:   3'- gGCUGC-----UGGUGaa-CCaACCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 31961 0.66 0.861022
Target:  5'- gCCGGCGACgACgaacgcgugUGGCGCgcguaCGGCc -3'
miRNA:   3'- -GGCUGCUGgUGaacca----ACCGCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 28600 0.66 0.878485
Target:  5'- aCCGccuACGAaaACcUGGUUGaGCgcaagGCCGGCg -3'
miRNA:   3'- -GGC---UGCUggUGaACCAAC-CG-----CGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.