Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 102988 | 0.68 | 0.77135 |
Target: 5'- cCCuGCGGgCACgUGG-UGGCGUgCGGCa -3' miRNA: 3'- -GGcUGCUgGUGaACCaACCGCG-GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 98325 | 0.68 | 0.77135 |
Target: 5'- uCCGuucaACGugCACau-GUUGGCGCugCGGCa -3' miRNA: 3'- -GGC----UGCugGUGaacCAACCGCG--GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 102430 | 0.68 | 0.77135 |
Target: 5'- gCCGuugcCGAgCGCcgGGUUGGCGCCcuuGCc -3' miRNA: 3'- -GGCu---GCUgGUGaaCCAACCGCGGc--CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 30639 | 0.68 | 0.77135 |
Target: 5'- gCCGuCGACaaACggcaaGUUgGGCGCCGGCa -3' miRNA: 3'- -GGCuGCUGg-UGaac--CAA-CCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 873 | 0.68 | 0.780543 |
Target: 5'- uCCGuuGACCACUUug--GGCGCgagaaCGGCg -3' miRNA: 3'- -GGCugCUGGUGAAccaaCCGCG-----GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 89896 | 0.68 | 0.780543 |
Target: 5'- -gGACGugUACg----UGGCGCCGcGCa -3' miRNA: 3'- ggCUGCugGUGaaccaACCGCGGC-CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 61537 | 0.68 | 0.789605 |
Target: 5'- uUGGCGGCCAUcaugUGGgacacgGuGCGuuGGCa -3' miRNA: 3'- gGCUGCUGGUGa---ACCaa----C-CGCggCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 24098 | 0.68 | 0.789605 |
Target: 5'- --uGCGGCCuguaaaaauuACUauugauUGGUUGGCGCaaaGGCg -3' miRNA: 3'- ggcUGCUGG----------UGA------ACCAACCGCGg--CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 124982 | 0.68 | 0.789605 |
Target: 5'- gCCGcGCGuCCGCUUuacgugcaaGUUGGCGUCGGg -3' miRNA: 3'- -GGC-UGCuGGUGAAc--------CAACCGCGGCCg -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 11981 | 0.68 | 0.789605 |
Target: 5'- aCUGGCGACgGCgUUGGgcgcgGGUGUggUGGCg -3' miRNA: 3'- -GGCUGCUGgUG-AACCaa---CCGCG--GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 62525 | 0.68 | 0.789605 |
Target: 5'- uUGACGuCgACUUGGacgcUUGcGCGuuGGCa -3' miRNA: 3'- gGCUGCuGgUGAACC----AAC-CGCggCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 111063 | 0.68 | 0.789605 |
Target: 5'- gUCGACGGCUucuACgUGGacGaCGCCGGCg -3' miRNA: 3'- -GGCUGCUGG---UGaACCaaCcGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75358 | 0.68 | 0.789605 |
Target: 5'- aUGGCGuCgGCgUUGGUgaUGGCGuuGGUg -3' miRNA: 3'- gGCUGCuGgUG-AACCA--ACCGCggCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 128648 | 0.68 | 0.789605 |
Target: 5'- gCCGcCGcaACCugUcucUGGUgcgcGGcCGCCGGCu -3' miRNA: 3'- -GGCuGC--UGGugA---ACCAa---CC-GCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 84364 | 0.68 | 0.789605 |
Target: 5'- gCCGguaggugcGCGGCCuGCcgGGgcGGCGUCGGUa -3' miRNA: 3'- -GGC--------UGCUGG-UGaaCCaaCCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 27787 | 0.68 | 0.789605 |
Target: 5'- aCGcCGACCACaaaucGGUUGGgGUugaugCGGCa -3' miRNA: 3'- gGCuGCUGGUGaa---CCAACCgCG-----GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 8229 | 0.67 | 0.79853 |
Target: 5'- gUCGAcuuCGAUCACUUuuuugGGCaGCCGGCg -3' miRNA: 3'- -GGCU---GCUGGUGAAccaa-CCG-CGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 90003 | 0.67 | 0.79853 |
Target: 5'- gCCGcggcGCGGCaACUggacgcgcaacUGGccgcGGCGCCGGCg -3' miRNA: 3'- -GGC----UGCUGgUGA-----------ACCaa--CCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 111848 | 0.67 | 0.80206 |
Target: 5'- gCCGGCcaggugucuGGCCACgcacgucagcaacGGcgaGGCGCCGGCc -3' miRNA: 3'- -GGCUG---------CUGGUGaa-----------CCaa-CCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 122760 | 0.67 | 0.807309 |
Target: 5'- gCCGACucGCCACaggcgcaGUUGGCGgaaaCCGGCg -3' miRNA: 3'- -GGCUGc-UGGUGaac----CAACCGC----GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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