miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 873 0.68 0.780543
Target:  5'- uCCGuuGACCACUUug--GGCGCgagaaCGGCg -3'
miRNA:   3'- -GGCugCUGGUGAAccaaCCGCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 89896 0.68 0.780543
Target:  5'- -gGACGugUACg----UGGCGCCGcGCa -3'
miRNA:   3'- ggCUGCugGUGaaccaACCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 102988 0.68 0.77135
Target:  5'- cCCuGCGGgCACgUGG-UGGCGUgCGGCa -3'
miRNA:   3'- -GGcUGCUgGUGaACCaACCGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 7379 0.68 0.77135
Target:  5'- gCCGGauCGGCCACgcGGUUGcGCGaCgCGGUc -3'
miRNA:   3'- -GGCU--GCUGGUGaaCCAAC-CGC-G-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 102430 0.68 0.77135
Target:  5'- gCCGuugcCGAgCGCcgGGUUGGCGCCcuuGCc -3'
miRNA:   3'- -GGCu---GCUgGUGaaCCAACCGCGGc--CG- -5'
6780 3' -57.2 NC_001875.2 + 98325 0.68 0.77135
Target:  5'- uCCGuucaACGugCACau-GUUGGCGCugCGGCa -3'
miRNA:   3'- -GGC----UGCugGUGaacCAACCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 30639 0.68 0.77135
Target:  5'- gCCGuCGACaaACggcaaGUUgGGCGCCGGCa -3'
miRNA:   3'- -GGCuGCUGg-UGaac--CAA-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 29271 0.68 0.770424
Target:  5'- gCCGcCGACCGCgccGGcggGGCGCggucgugUGGCg -3'
miRNA:   3'- -GGCuGCUGGUGaa-CCaa-CCGCG-------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 81340 0.68 0.769497
Target:  5'- gCCGcGCGGCgCGC-UGGUgccgcgcgcacGCGCCGGCc -3'
miRNA:   3'- -GGC-UGCUG-GUGaACCAac---------CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 31542 0.68 0.762038
Target:  5'- aCGGC-ACCACUUgcacgcgcugcaGGUUGG-GCCcGGCg -3'
miRNA:   3'- gGCUGcUGGUGAA------------CCAACCgCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 20740 0.68 0.762038
Target:  5'- gCCGugcACG-CCGCaacaaaaGGUUuucacGGCGCCGGCg -3'
miRNA:   3'- -GGC---UGCuGGUGaa-----CCAA-----CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 100145 0.68 0.762038
Target:  5'- gCCGGCGGCgCGCaaGcGgcGGUccacGCCGGCa -3'
miRNA:   3'- -GGCUGCUG-GUGaaC-CaaCCG----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 37092 0.68 0.7611
Target:  5'- aCGACaccGCCGCgUGGgugUGcgggcgcggcgccGCGCCGGCg -3'
miRNA:   3'- gGCUGc--UGGUGaACCa--AC-------------CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 94253 0.68 0.758281
Target:  5'- gCGGcCGGCCGCggcgcucGCGCCGGCg -3'
miRNA:   3'- gGCU-GCUGGUGaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 20282 0.68 0.752613
Target:  5'- aCGACGcuugugGCCACgccgGGgaacuggUGGUGCUGGUc -3'
miRNA:   3'- gGCUGC------UGGUGaa--CCa------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 32471 0.68 0.752613
Target:  5'- gCGGCGcuuugGCCACUUGGcgGGCGCgcccaaguugcgCGGa -3'
miRNA:   3'- gGCUGC-----UGGUGAACCaaCCGCG------------GCCg -5'
6780 3' -57.2 NC_001875.2 + 85240 0.68 0.752613
Target:  5'- gUCGACGAgCGCg-GGUUccGCGCuCGGCg -3'
miRNA:   3'- -GGCUGCUgGUGaaCCAAc-CGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 112710 0.68 0.743085
Target:  5'- gCUGACGgcGCCGCcgUGGUaGGCGCguCGcGCg -3'
miRNA:   3'- -GGCUGC--UGGUGa-ACCAaCCGCG--GC-CG- -5'
6780 3' -57.2 NC_001875.2 + 129966 0.68 0.743085
Target:  5'- gCGGCGGCgGCggcGGc-GGCGgCGGCa -3'
miRNA:   3'- gGCUGCUGgUGaa-CCaaCCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 89497 0.68 0.743085
Target:  5'- gCCG-CaACCGCUUGGgaaaggugcagUUGGCGUCGcGCc -3'
miRNA:   3'- -GGCuGcUGGUGAACC-----------AACCGCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.