Results 81 - 100 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 89497 | 0.68 | 0.743085 |
Target: 5'- gCCG-CaACCGCUUGGgaaaggugcagUUGGCGUCGcGCc -3' miRNA: 3'- -GGCuGcUGGUGAACC-----------AACCGCGGC-CG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 12842 | 0.68 | 0.740208 |
Target: 5'- cCCGGCGGCgccggcuagCACgcagccgUGGUUGGUcguguuggcaaacaGCCGGUu -3' miRNA: 3'- -GGCUGCUG---------GUGa------ACCAACCG--------------CGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 95350 | 0.69 | 0.733463 |
Target: 5'- aCCGGCGGCgCACgUGcac-GCGUCGGCg -3' miRNA: 3'- -GGCUGCUG-GUGaACcaacCGCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 9791 | 0.69 | 0.733463 |
Target: 5'- uCCGGgGugUACUUGcacGGCGCCaucGGCg -3' miRNA: 3'- -GGCUgCugGUGAACcaaCCGCGG---CCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 41476 | 0.69 | 0.733463 |
Target: 5'- gCGGCGuguCUugUgUGGUcuGCGCCGGCc -3' miRNA: 3'- gGCUGCu--GGugA-ACCAacCGCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 22715 | 0.69 | 0.733463 |
Target: 5'- gUCGuCG-CCACUgUGGccuacUUGuGCGCCGGCc -3' miRNA: 3'- -GGCuGCuGGUGA-ACC-----AAC-CGCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 110621 | 0.69 | 0.723756 |
Target: 5'- aCGugGugCGgUuuaaacacaaccUGG-UGGCGCUGGCc -3' miRNA: 3'- gGCugCugGUgA------------ACCaACCGCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 55337 | 0.69 | 0.723756 |
Target: 5'- aUGACGcGCCGCUUcGggGGCGCCGc- -3' miRNA: 3'- gGCUGC-UGGUGAAcCaaCCGCGGCcg -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 95423 | 0.69 | 0.723756 |
Target: 5'- cCCGAC-ACCGC------GGCGCCGGCc -3' miRNA: 3'- -GGCUGcUGGUGaaccaaCCGCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 29778 | 0.69 | 0.723756 |
Target: 5'- aUGuACGGCCGCgggUGGacgGGCgugucaggcuacGCCGGCg -3' miRNA: 3'- gGC-UGCUGGUGa--ACCaa-CCG------------CGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 81903 | 0.69 | 0.713971 |
Target: 5'- uCCGACGACCAgCUgauuaGcGCGCgCGGCu -3' miRNA: 3'- -GGCUGCUGGU-GAaccaaC-CGCG-GCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 119054 | 0.69 | 0.70412 |
Target: 5'- uCCGGCGugCGCaUGuGcgcGGCGCCccGGCu -3' miRNA: 3'- -GGCUGCugGUGaAC-Caa-CCGCGG--CCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 39150 | 0.69 | 0.70412 |
Target: 5'- aUGAUGGCCAuUUUGGggccgcgaGGCggGCCGGCg -3' miRNA: 3'- gGCUGCUGGU-GAACCaa------CCG--CGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 11077 | 0.69 | 0.694208 |
Target: 5'- gCGACGAgCACUUcgcGGUUGGaCGUUuggGGCu -3' miRNA: 3'- gGCUGCUgGUGAA---CCAACC-GCGG---CCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 11614 | 0.69 | 0.684247 |
Target: 5'- gCGGCGugGCCACgaaugGGUUGGCGC--GCa -3' miRNA: 3'- gGCUGC--UGGUGaa---CCAACCGCGgcCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 38499 | 0.69 | 0.684247 |
Target: 5'- cCCGACGACaa---GG-UGGUGCUGGUg -3' miRNA: 3'- -GGCUGCUGgugaaCCaACCGCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 131723 | 0.69 | 0.684247 |
Target: 5'- gCCGAcaCGACUAUUuugaaUGGUgcauUGG-GCCGGCg -3' miRNA: 3'- -GGCU--GCUGGUGA-----ACCA----ACCgCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 88333 | 0.69 | 0.684247 |
Target: 5'- aCCGACGACC---UGGagGGCGUCaaGGUg -3' miRNA: 3'- -GGCUGCUGGugaACCaaCCGCGG--CCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 31688 | 0.7 | 0.674244 |
Target: 5'- gCCGGCGuggaccGCCGCUUGcgcGcCGCCGGCg -3' miRNA: 3'- -GGCUGC------UGGUGAACcaaCcGCGGCCG- -5' |
|||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 97887 | 0.7 | 0.674244 |
Target: 5'- gCCGcACGGgCACgUUGcg-GGCGUCGGCg -3' miRNA: 3'- -GGC-UGCUgGUG-AACcaaCCGCGGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home