miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 38499 0.69 0.684247
Target:  5'- cCCGACGACaa---GG-UGGUGCUGGUg -3'
miRNA:   3'- -GGCUGCUGgugaaCCaACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 39150 0.69 0.70412
Target:  5'- aUGAUGGCCAuUUUGGggccgcgaGGCggGCCGGCg -3'
miRNA:   3'- gGCUGCUGGU-GAACCaa------CCG--CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 40097 0.7 0.674244
Target:  5'- gCUGACGcGCCAC-UGGcUGGCGCUGu- -3'
miRNA:   3'- -GGCUGC-UGGUGaACCaACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 40127 0.72 0.534185
Target:  5'- gCCGACGGCCGucacCUccaUGGgcUGGCaccgcacgGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGU----GA---ACCa-ACCG--------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 40191 0.7 0.648099
Target:  5'- aCUGGaacCCGCU-GGUgcccaucacggaaauUGGCGCCGGCg -3'
miRNA:   3'- -GGCUgcuGGUGAaCCA---------------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 40464 0.66 0.856472
Target:  5'- cCCGAgGGCg---UGG-UGGUGCCGGg -3'
miRNA:   3'- -GGCUgCUGgugaACCaACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 41140 0.67 0.832687
Target:  5'- aCCGGCGGCC---------GCGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGugaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 41476 0.69 0.733463
Target:  5'- gCGGCGuguCUugUgUGGUcuGCGCCGGCc -3'
miRNA:   3'- gGCUGCu--GGugA-ACCAacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 42744 0.7 0.664207
Target:  5'- gCGGCGACgCGCaUGGUgagcGGCGCgcucggguCGGCc -3'
miRNA:   3'- gGCUGCUG-GUGaACCAa---CCGCG--------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 43791 0.7 0.633978
Target:  5'- gCUGGCGACaaACUUGagcGUUGGCacggcuuuGCCGGCu -3'
miRNA:   3'- -GGCUGCUGg-UGAAC---CAACCG--------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 43985 0.66 0.839999
Target:  5'- gCCGACcGCCACggacagcccgacgGGCGCCGuGCc -3'
miRNA:   3'- -GGCUGcUGGUGaaccaa-------CCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 48386 0.66 0.856472
Target:  5'- uCCGACG-CgGCgaca--GGUGCCGGCu -3'
miRNA:   3'- -GGCUGCuGgUGaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 50723 0.67 0.832687
Target:  5'- gCCGGCGACUACUguuacUGGCccaaCUGGCc -3'
miRNA:   3'- -GGCUGCUGGUGAacca-ACCGc---GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 51190 0.66 0.856472
Target:  5'- gCCcACGACgGCgcGGUucUGGCGCCGc- -3'
miRNA:   3'- -GGcUGCUGgUGaaCCA--ACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 53870 0.73 0.495701
Target:  5'- aCCGuCGGCCugUUGGUcgugcGGCcGCCgcGGCg -3'
miRNA:   3'- -GGCuGCUGGugAACCAa----CCG-CGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 54575 0.71 0.573676
Target:  5'- gCGGCGGCCGCUUcgcccGGcgGcGCGCCcacGGCg -3'
miRNA:   3'- gGCUGCUGGUGAA-----CCaaC-CGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 55337 0.69 0.723756
Target:  5'- aUGACGcGCCGCUUcGggGGCGCCGc- -3'
miRNA:   3'- gGCUGC-UGGUGAAcCaaCCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 56679 0.66 0.870629
Target:  5'- gUGACuacauuaGACCGCUgugcaacGGUUGGCcgagGCCGcGCg -3'
miRNA:   3'- gGCUG-------CUGGUGAa------CCAACCG----CGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 56860 0.71 0.593686
Target:  5'- gUGAUGAacaGCUUGGUguuUGGCugcuaGCCGGCa -3'
miRNA:   3'- gGCUGCUgg-UGAACCA---ACCG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 57689 0.66 0.864015
Target:  5'- gCUGGCGGCgGCg-----GGCGCCGcGCc -3'
miRNA:   3'- -GGCUGCUGgUGaaccaaCCGCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.