miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 58022 0.66 0.848733
Target:  5'- aCCGAuaCGACUACaacgUGGgcGGCGCgCuGCc -3'
miRNA:   3'- -GGCU--GCUGGUGa---ACCaaCCGCG-GcCG- -5'
6780 3' -57.2 NC_001875.2 + 59595 0.7 0.63196
Target:  5'- gCCGACGugCGCgagcacgGGCGCUuuGGCg -3'
miRNA:   3'- -GGCUGCugGUGaaccaa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 60176 0.7 0.654145
Target:  5'- gUCGGCGGCacaaauacagCGCUUcGUUGaauuGCGCCGGCg -3'
miRNA:   3'- -GGCUGCUG----------GUGAAcCAAC----CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 61537 0.68 0.789605
Target:  5'- uUGGCGGCCAUcaugUGGgacacgGuGCGuuGGCa -3'
miRNA:   3'- gGCUGCUGGUGa---ACCaa----C-CGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 61590 0.77 0.291675
Target:  5'- gCGGCGACgGCUcg---GGCGCCGGCg -3'
miRNA:   3'- gGCUGCUGgUGAaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 62525 0.68 0.789605
Target:  5'- uUGACGuCgACUUGGacgcUUGcGCGuuGGCa -3'
miRNA:   3'- gGCUGCuGgUGAACC----AAC-CGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 65434 0.66 0.878485
Target:  5'- uCCGGCGugCACc--GcUGGCGgUCGGUg -3'
miRNA:   3'- -GGCUGCugGUGaacCaACCGC-GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 65704 0.73 0.476932
Target:  5'- gCCGGcCGACCACUguuccgcGGgcGGCGCCGc- -3'
miRNA:   3'- -GGCU-GCUGGUGAa------CCaaCCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 65769 0.66 0.848733
Target:  5'- gCCGGCGGCugggcgagCACgcgcgcGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUG--------GUGaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 68699 0.66 0.871354
Target:  5'- cCCGugGACC-Cgu-----GCGCCGGCc -3'
miRNA:   3'- -GGCugCUGGuGaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 69208 0.67 0.815933
Target:  5'- gCCGACGGCCaguacGCUUGuucgGGCGaCGcGCg -3'
miRNA:   3'- -GGCUGCUGG-----UGAACcaa-CCGCgGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 70204 0.77 0.305316
Target:  5'- aCGGCGACCACUg----GGCGCCcgaGGCg -3'
miRNA:   3'- gGCUGCUGGUGAaccaaCCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 72574 0.66 0.856472
Target:  5'- gCG-CGGgCGCUgcgGGUgcgGGCGCUgcgGGCg -3'
miRNA:   3'- gGCuGCUgGUGAa--CCAa--CCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 73706 0.66 0.848733
Target:  5'- gCGGCGGCUGCggcuGUUGGgGuuGGUc -3'
miRNA:   3'- gGCUGCUGGUGaac-CAACCgCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 75238 0.75 0.397271
Target:  5'- aCGGCGACgGCgaUGGcggcGGCGUCGGCg -3'
miRNA:   3'- gGCUGCUGgUGa-ACCaa--CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75291 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75325 0.73 0.476932
Target:  5'- nCGAUGGCguCggugUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- gGCUGCUGguG----AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75358 0.68 0.789605
Target:  5'- aUGGCGuCgGCgUUGGUgaUGGCGuuGGUg -3'
miRNA:   3'- gGCUGCuGgUG-AACCA--ACCGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 75393 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75441 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.