miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 75478 0.74 0.422883
Target:  5'- aUGGCGuCgGCgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- gGCUGCuGgUG-AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75513 0.7 0.632969
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGuuGGUg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 75555 0.71 0.612798
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgauagcgcUGGCGUCGGCn -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75597 0.79 0.230588
Target:  5'- gUCGGCGAUgGCgucgGcGUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaa--C-CAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75651 0.75 0.388959
Target:  5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75675 0.75 0.388959
Target:  5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 77628 0.66 0.870629
Target:  5'- aUCGGCGGCaacgGCUcgGGUcUGGUGCCgaacccgGGCg -3'
miRNA:   3'- -GGCUGCUGg---UGAa-CCA-ACCGCGG-------CCG- -5'
6780 3' -57.2 NC_001875.2 + 81340 0.68 0.769497
Target:  5'- gCCGcGCGGCgCGC-UGGUgccgcgcgcacGCGCCGGCc -3'
miRNA:   3'- -GGC-UGCUG-GUGaACCAac---------CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 81903 0.69 0.713971
Target:  5'- uCCGACGACCAgCUgauuaGcGCGCgCGGCu -3'
miRNA:   3'- -GGCUGCUGGU-GAaccaaC-CGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 81963 1.13 0.001147
Target:  5'- uCCGACGACCACUUGGUUGGCGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGUGAACCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 82202 0.67 0.824395
Target:  5'- gCCGGCGGCCGCUcGuGUcGcCGCUGGa -3'
miRNA:   3'- -GGCUGCUGGUGAaC-CAaCcGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 82267 0.66 0.862522
Target:  5'- gUCGGCGcgcaGCUGCUUGGccacuacaauucUGGCGUCGGg -3'
miRNA:   3'- -GGCUGC----UGGUGAACCa-----------ACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 83368 0.66 0.851852
Target:  5'- gUCGGCGGCgcuaaaCACUUgcaaacaguaucgcgGGUUGGuCGCCauGGCg -3'
miRNA:   3'- -GGCUGCUG------GUGAA---------------CCAACC-GCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 84364 0.68 0.789605
Target:  5'- gCCGguaggugcGCGGCCuGCcgGGgcGGCGUCGGUa -3'
miRNA:   3'- -GGC--------UGCUGG-UGaaCCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 85240 0.68 0.752613
Target:  5'- gUCGACGAgCGCg-GGUUccGCGCuCGGCg -3'
miRNA:   3'- -GGCUGCUgGUGaaCCAAc-CGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 88333 0.69 0.684247
Target:  5'- aCCGACGACC---UGGagGGCGUCaaGGUg -3'
miRNA:   3'- -GGCUGCUGGugaACCaaCCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 89497 0.68 0.743085
Target:  5'- gCCG-CaACCGCUUGGgaaaggugcagUUGGCGUCGcGCc -3'
miRNA:   3'- -GGCuGcUGGUGAACC-----------AACCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 89896 0.68 0.780543
Target:  5'- -gGACGugUACg----UGGCGCCGcGCa -3'
miRNA:   3'- ggCUGCugGUGaaccaACCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 90003 0.67 0.79853
Target:  5'- gCCGcggcGCGGCaACUggacgcgcaacUGGccgcGGCGCCGGCg -3'
miRNA:   3'- -GGC----UGCUGgUGA-----------ACCaa--CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 90819 0.73 0.458522
Target:  5'- uCC-ACGGCCACgcGGUUGGCGaCCuGCu -3'
miRNA:   3'- -GGcUGCUGGUGaaCCAACCGC-GGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.