Results 141 - 146 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 125949 | 0.75 | 0.397271 |
Target: 5'- gCUGuACGACUACaUGGUUcGGCGCauCGGCg -3' miRNA: 3'- -GGC-UGCUGGUGaACCAA-CCGCG--GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 127044 | 0.66 | 0.840802 |
Target: 5'- gCUGGCGACag-------GGCGCCGGCu -3' miRNA: 3'- -GGCUGCUGgugaaccaaCCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 128648 | 0.68 | 0.789605 |
Target: 5'- gCCGcCGcaACCugUcucUGGUgcgcGGcCGCCGGCu -3' miRNA: 3'- -GGCuGC--UGGugA---ACCAa---CC-GCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 128762 | 0.66 | 0.840802 |
Target: 5'- gCCGAgGACCcCUUcuugGGCcCCGGCa -3' miRNA: 3'- -GGCUgCUGGuGAAccaaCCGcGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 129966 | 0.68 | 0.743085 |
Target: 5'- gCGGCGGCgGCggcGGc-GGCGgCGGCa -3' miRNA: 3'- gGCUGCUGgUGaa-CCaaCCGCgGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 131723 | 0.69 | 0.684247 |
Target: 5'- gCCGAcaCGACUAUUuugaaUGGUgcauUGG-GCCGGCg -3' miRNA: 3'- -GGCU--GCUGGUGA-----ACCA----ACCgCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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