miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 111771 0.66 0.86771
Target:  5'- gCCGACGACUggugucgcuggugACggcGGUgcacgcggccgacGGCGCCuGGCu -3'
miRNA:   3'- -GGCUGCUGG-------------UGaa-CCAa------------CCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 111147 0.72 0.524457
Target:  5'- uUGGCGGCgGCUUGGUgucacGGCGCUGcuuaGCg -3'
miRNA:   3'- gGCUGCUGgUGAACCAa----CCGCGGC----CG- -5'
6780 3' -57.2 NC_001875.2 + 111063 0.68 0.789605
Target:  5'- gUCGACGGCUucuACgUGGacGaCGCCGGCg -3'
miRNA:   3'- -GGCUGCUGG---UGaACCaaCcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 110681 0.66 0.855707
Target:  5'- gCCGaaaagaaGCGGCCGC--GGagGGCGCCGcGUu -3'
miRNA:   3'- -GGC-------UGCUGGUGaaCCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 110621 0.69 0.723756
Target:  5'- aCGugGugCGgUuuaaacacaaccUGG-UGGCGCUGGCc -3'
miRNA:   3'- gGCugCugGUgA------------ACCaACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 109846 0.66 0.878485
Target:  5'- gCCGGCGgauuuGCUGCgcGcGUuugccaagcUGGCGCUGGCg -3'
miRNA:   3'- -GGCUGC-----UGGUGaaC-CA---------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 107513 0.71 0.593686
Target:  5'- gCCG-CGGCaCGCUU-GUUGGCGCCGu- -3'
miRNA:   3'- -GGCuGCUG-GUGAAcCAACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 105212 0.66 0.848733
Target:  5'- gCCGugGcGCCcucgucauGCUUGGgcggccugucaUGGCGCCaGGUg -3'
miRNA:   3'- -GGCugC-UGG--------UGAACCa----------ACCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 103114 0.71 0.573676
Target:  5'- aUCGugGcUCGCUUGGc-GGCGgCGGCg -3'
miRNA:   3'- -GGCugCuGGUGAACCaaCCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 102988 0.68 0.77135
Target:  5'- cCCuGCGGgCACgUGG-UGGCGUgCGGCa -3'
miRNA:   3'- -GGcUGCUgGUGaACCaACCGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 102493 0.66 0.848733
Target:  5'- cCCGGaaacgGACCACaagcGGUgGGCGCC-GCa -3'
miRNA:   3'- -GGCUg----CUGGUGaa--CCAaCCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 102430 0.68 0.77135
Target:  5'- gCCGuugcCGAgCGCcgGGUUGGCGCCcuuGCc -3'
miRNA:   3'- -GGCu---GCUgGUGaaCCAACCGCGGc--CG- -5'
6780 3' -57.2 NC_001875.2 + 101218 0.71 0.613805
Target:  5'- gUCGACGGCU--UUGGUUGcGCGCaguuuaaaGGCg -3'
miRNA:   3'- -GGCUGCUGGugAACCAAC-CGCGg-------CCG- -5'
6780 3' -57.2 NC_001875.2 + 101150 0.73 0.50521
Target:  5'- aCGAuuuCGACCACgUGGccgugcgcgUGGCGCUGGUc -3'
miRNA:   3'- gGCU---GCUGGUGaACCa--------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 100587 0.7 0.644066
Target:  5'- gUCGACGcgUACgcgGGccgGGCGCCGGCc -3'
miRNA:   3'- -GGCUGCugGUGaa-CCaa-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 100145 0.68 0.762038
Target:  5'- gCCGGCGGCgCGCaaGcGgcGGUccacGCCGGCa -3'
miRNA:   3'- -GGCUGCUG-GUGaaC-CaaCCG----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 98487 0.67 0.815933
Target:  5'- gCGACuGCCGCgugcgUGaUUGGCuGCCGGg -3'
miRNA:   3'- gGCUGcUGGUGa----ACcAACCG-CGGCCg -5'
6780 3' -57.2 NC_001875.2 + 98335 0.67 0.824395
Target:  5'- gCCGcgcuGCGugUACaaucGGUUGGCGCaccccagcgcgCGGCg -3'
miRNA:   3'- -GGC----UGCugGUGaa--CCAACCGCG-----------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 98325 0.68 0.77135
Target:  5'- uCCGuucaACGugCACau-GUUGGCGCugCGGCa -3'
miRNA:   3'- -GGC----UGCugGUGaacCAACCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 97887 0.7 0.674244
Target:  5'- gCCGcACGGgCACgUUGcg-GGCGUCGGCg -3'
miRNA:   3'- -GGC-UGCUgGUG-AACcaaCCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.