Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 75675 | 0.75 | 0.388959 |
Target: 5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3' miRNA: 3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75651 | 0.75 | 0.388959 |
Target: 5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3' miRNA: 3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75597 | 0.79 | 0.230588 |
Target: 5'- gUCGGCGAUgGCgucgGcGUUGGCGUCGGCg -3' miRNA: 3'- -GGCUGCUGgUGaa--C-CAACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75555 | 0.71 | 0.612798 |
Target: 5'- gUCGGCGAUgGCgucggcgUUGGUgauagcgcUGGCGUCGGCn -3' miRNA: 3'- -GGCUGCUGgUG-------AACCA--------ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75513 | 0.7 | 0.632969 |
Target: 5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGuuGGUg -3' miRNA: 3'- -GGCUGCUGgUG-------AACCA--ACCGCggCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75478 | 0.74 | 0.422883 |
Target: 5'- aUGGCGuCgGCgUUGGUgaUGGCGUCGGCg -3' miRNA: 3'- gGCUGCuGgUG-AACCA--ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75441 | 0.77 | 0.297753 |
Target: 5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3' miRNA: 3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75393 | 0.77 | 0.297753 |
Target: 5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3' miRNA: 3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75358 | 0.68 | 0.789605 |
Target: 5'- aUGGCGuCgGCgUUGGUgaUGGCGuuGGUg -3' miRNA: 3'- gGCUGCuGgUG-AACCA--ACCGCggCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75325 | 0.73 | 0.476932 |
Target: 5'- nCGAUGGCguCggugUUGGUgaUGGCGUCGGCg -3' miRNA: 3'- gGCUGCUGguG----AACCA--ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75291 | 0.77 | 0.297753 |
Target: 5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3' miRNA: 3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 75238 | 0.75 | 0.397271 |
Target: 5'- aCGGCGACgGCgaUGGcggcGGCGUCGGCg -3' miRNA: 3'- gGCUGCUGgUGa-ACCaa--CCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 73706 | 0.66 | 0.848733 |
Target: 5'- gCGGCGGCUGCggcuGUUGGgGuuGGUc -3' miRNA: 3'- gGCUGCUGGUGaac-CAACCgCggCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 72574 | 0.66 | 0.856472 |
Target: 5'- gCG-CGGgCGCUgcgGGUgcgGGCGCUgcgGGCg -3' miRNA: 3'- gGCuGCUgGUGAa--CCAa--CCGCGG---CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 70204 | 0.77 | 0.305316 |
Target: 5'- aCGGCGACCACUg----GGCGCCcgaGGCg -3' miRNA: 3'- gGCUGCUGGUGAaccaaCCGCGG---CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 69208 | 0.67 | 0.815933 |
Target: 5'- gCCGACGGCCaguacGCUUGuucgGGCGaCGcGCg -3' miRNA: 3'- -GGCUGCUGG-----UGAACcaa-CCGCgGC-CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 68699 | 0.66 | 0.871354 |
Target: 5'- cCCGugGACC-Cgu-----GCGCCGGCc -3' miRNA: 3'- -GGCugCUGGuGaaccaacCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 65769 | 0.66 | 0.848733 |
Target: 5'- gCCGGCGGCugggcgagCACgcgcgcGGCGUCGGCg -3' miRNA: 3'- -GGCUGCUG--------GUGaaccaaCCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 65704 | 0.73 | 0.476932 |
Target: 5'- gCCGGcCGACCACUguuccgcGGgcGGCGCCGc- -3' miRNA: 3'- -GGCU-GCUGGUGAa------CCaaCCGCGGCcg -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 65434 | 0.66 | 0.878485 |
Target: 5'- uCCGGCGugCACc--GcUGGCGgUCGGUg -3' miRNA: 3'- -GGCUGCugGUGaacCaACCGC-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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