Results 101 - 120 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 40464 | 0.66 | 0.856472 |
Target: 5'- cCCGAgGGCg---UGG-UGGUGCCGGg -3' miRNA: 3'- -GGCUgCUGgugaACCaACCGCGGCCg -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 40191 | 0.7 | 0.648099 |
Target: 5'- aCUGGaacCCGCU-GGUgcccaucacggaaauUGGCGCCGGCg -3' miRNA: 3'- -GGCUgcuGGUGAaCCA---------------ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 40127 | 0.72 | 0.534185 |
Target: 5'- gCCGACGGCCGucacCUccaUGGgcUGGCaccgcacgGCCGGCa -3' miRNA: 3'- -GGCUGCUGGU----GA---ACCa-ACCG--------CGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 40097 | 0.7 | 0.674244 |
Target: 5'- gCUGACGcGCCAC-UGGcUGGCGCUGu- -3' miRNA: 3'- -GGCUGC-UGGUGaACCaACCGCGGCcg -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 39150 | 0.69 | 0.70412 |
Target: 5'- aUGAUGGCCAuUUUGGggccgcgaGGCggGCCGGCg -3' miRNA: 3'- gGCUGCUGGU-GAACCaa------CCG--CGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 38499 | 0.69 | 0.684247 |
Target: 5'- cCCGACGACaa---GG-UGGUGCUGGUg -3' miRNA: 3'- -GGCUGCUGgugaaCCaACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 37092 | 0.68 | 0.7611 |
Target: 5'- aCGACaccGCCGCgUGGgugUGcgggcgcggcgccGCGCCGGCg -3' miRNA: 3'- gGCUGc--UGGUGaACCa--AC-------------CGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 32471 | 0.68 | 0.752613 |
Target: 5'- gCGGCGcuuugGCCACUUGGcgGGCGCgcccaaguugcgCGGa -3' miRNA: 3'- gGCUGC-----UGGUGAACCaaCCGCG------------GCCg -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 31961 | 0.66 | 0.861022 |
Target: 5'- gCCGGCGACgACgaacgcgugUGGCGCgcguaCGGCc -3' miRNA: 3'- -GGCUGCUGgUGaacca----ACCGCG-----GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 31688 | 0.7 | 0.674244 |
Target: 5'- gCCGGCGuggaccGCCGCUUGcgcGcCGCCGGCg -3' miRNA: 3'- -GGCUGC------UGGUGAACcaaCcGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 31573 | 0.66 | 0.848733 |
Target: 5'- gUCG-CGugCACgaguuaagggUGGUguccGGCGCCGuGCc -3' miRNA: 3'- -GGCuGCugGUGa---------ACCAa---CCGCGGC-CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 31542 | 0.68 | 0.762038 |
Target: 5'- aCGGC-ACCACUUgcacgcgcugcaGGUUGG-GCCcGGCg -3' miRNA: 3'- gGCUGcUGGUGAA------------CCAACCgCGG-CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 31238 | 0.66 | 0.840802 |
Target: 5'- aCaGCGGCCGC--GGccGGCGCCcGGCc -3' miRNA: 3'- gGcUGCUGGUGaaCCaaCCGCGG-CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 30639 | 0.68 | 0.77135 |
Target: 5'- gCCGuCGACaaACggcaaGUUgGGCGCCGGCa -3' miRNA: 3'- -GGCuGCUGg-UGaac--CAA-CCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 30223 | 0.71 | 0.612798 |
Target: 5'- gUGGCGACCACUuuguacgUGGUcgcguUGaCGCUGGCc -3' miRNA: 3'- gGCUGCUGGUGA-------ACCA-----ACcGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 29778 | 0.69 | 0.723756 |
Target: 5'- aUGuACGGCCGCgggUGGacgGGCgugucaggcuacGCCGGCg -3' miRNA: 3'- gGC-UGCUGGUGa--ACCaa-CCG------------CGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 29271 | 0.68 | 0.770424 |
Target: 5'- gCCGcCGACCGCgccGGcggGGCGCggucgugUGGCg -3' miRNA: 3'- -GGCuGCUGGUGaa-CCaa-CCGCG-------GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 28600 | 0.66 | 0.878485 |
Target: 5'- aCCGccuACGAaaACcUGGUUGaGCgcaagGCCGGCg -3' miRNA: 3'- -GGC---UGCUggUGaACCAAC-CG-----CGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 27787 | 0.68 | 0.789605 |
Target: 5'- aCGcCGACCACaaaucGGUUGGgGUugaugCGGCa -3' miRNA: 3'- gGCuGCUGGUGaa---CCAACCgCG-----GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 24098 | 0.68 | 0.789605 |
Target: 5'- --uGCGGCCuguaaaaauuACUauugauUGGUUGGCGCaaaGGCg -3' miRNA: 3'- ggcUGCUGG----------UGA------ACCAACCGCGg--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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