Results 121 - 140 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 3' | -57.2 | NC_001875.2 | + | 22715 | 0.69 | 0.733463 |
Target: 5'- gUCGuCG-CCACUgUGGccuacUUGuGCGCCGGCc -3' miRNA: 3'- -GGCuGCuGGUGA-ACC-----AAC-CGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 21592 | 0.66 | 0.859513 |
Target: 5'- aCGugGACCACUUGaacagcgacaugGGUGUggUGGCu -3' miRNA: 3'- gGCugCUGGUGAACcaa---------CCGCG--GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 20740 | 0.68 | 0.762038 |
Target: 5'- gCCGugcACG-CCGCaacaaaaGGUUuucacGGCGCCGGCg -3' miRNA: 3'- -GGC---UGCuGGUGaa-----CCAA-----CCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 20282 | 0.68 | 0.752613 |
Target: 5'- aCGACGcuugugGCCACgccgGGgaacuggUGGUGCUGGUc -3' miRNA: 3'- gGCUGC------UGGUGaa--CCa------ACCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 19119 | 0.7 | 0.633978 |
Target: 5'- uUCGACGagGCCACgcucgUGGgccaaGCGCUGGCc -3' miRNA: 3'- -GGCUGC--UGGUGa----ACCaac--CGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 18171 | 0.79 | 0.241877 |
Target: 5'- gCGACGccGCCACUgUGGc-GGUGCCGGCg -3' miRNA: 3'- gGCUGC--UGGUGA-ACCaaCCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 16281 | 0.71 | 0.613805 |
Target: 5'- cCCGGCGACCGCac-GUccaUGuGCGCCaGCa -3' miRNA: 3'- -GGCUGCUGGUGaacCA---AC-CGCGGcCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 15925 | 0.66 | 0.878485 |
Target: 5'- aCCGGCaacauGACCcaGC-UGGcggGGCGCCaGCa -3' miRNA: 3'- -GGCUG-----CUGG--UGaACCaa-CCGCGGcCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 14486 | 0.66 | 0.870629 |
Target: 5'- cCCGACGGCCAgccggccCgccGGUUcgcccGCGCCGcGCc -3' miRNA: 3'- -GGCUGCUGGU-------Gaa-CCAAc----CGCGGC-CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 13149 | 0.68 | 0.743085 |
Target: 5'- gCGAcaCGACCACgcGGUaGGCGUcgccgaacaCGGCg -3' miRNA: 3'- gGCU--GCUGGUGaaCCAaCCGCG---------GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 12842 | 0.68 | 0.740208 |
Target: 5'- cCCGGCGGCgccggcuagCACgcagccgUGGUUGGUcguguuggcaaacaGCCGGUu -3' miRNA: 3'- -GGCUGCUG---------GUGa------ACCAACCG--------------CGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 11981 | 0.68 | 0.789605 |
Target: 5'- aCUGGCGACgGCgUUGGgcgcgGGUGUggUGGCg -3' miRNA: 3'- -GGCUGCUGgUG-AACCaa---CCGCG--GCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 11805 | 0.66 | 0.878485 |
Target: 5'- uUGcCGGCCGCgucgguguuugUGGUc-GCGCCGGUg -3' miRNA: 3'- gGCuGCUGGUGa----------ACCAacCGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 11614 | 0.69 | 0.684247 |
Target: 5'- gCGGCGugGCCACgaaugGGUUGGCGC--GCa -3' miRNA: 3'- gGCUGC--UGGUGaa---CCAACCGCGgcCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 11077 | 0.69 | 0.694208 |
Target: 5'- gCGACGAgCACUUcgcGGUUGGaCGUUuggGGCu -3' miRNA: 3'- gGCUGCUgGUGAA---CCAACC-GCGG---CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 10865 | 0.66 | 0.864015 |
Target: 5'- aCGACGcggugGCCGCgucGG-UGGCGCUGccGCg -3' miRNA: 3'- gGCUGC-----UGGUGaa-CCaACCGCGGC--CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 10664 | 0.66 | 0.871354 |
Target: 5'- gCGGCGGacugCACUUGGcgcaGGCGCUGccGCa -3' miRNA: 3'- gGCUGCUg---GUGAACCaa--CCGCGGC--CG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 9791 | 0.69 | 0.733463 |
Target: 5'- uCCGGgGugUACUUGcacGGCGCCaucGGCg -3' miRNA: 3'- -GGCUgCugGUGAACcaaCCGCGG---CCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 9045 | 0.74 | 0.422883 |
Target: 5'- gCCGcCGGCCGCgccGGUUuccGCGCCGGUu -3' miRNA: 3'- -GGCuGCUGGUGaa-CCAAc--CGCGGCCG- -5' |
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6780 | 3' | -57.2 | NC_001875.2 | + | 8229 | 0.67 | 0.79853 |
Target: 5'- gUCGAcuuCGAUCACUUuuuugGGCaGCCGGCg -3' miRNA: 3'- -GGCU---GCUGGUGAAccaa-CCG-CGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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