miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 56860 0.71 0.593686
Target:  5'- gUGAUGAacaGCUUGGUguuUGGCugcuaGCCGGCa -3'
miRNA:   3'- gGCUGCUgg-UGAACCA---ACCG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 5306 0.71 0.604742
Target:  5'- cCCGACGACCACUccauugcgcgcuaccUgcucgccgagugcgGGgcGGUGCUGGUc -3'
miRNA:   3'- -GGCUGCUGGUGA---------------A--------------CCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 31688 0.7 0.674244
Target:  5'- gCCGGCGuggaccGCCGCUUGcgcGcCGCCGGCg -3'
miRNA:   3'- -GGCUGC------UGGUGAACcaaCcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 38499 0.69 0.684247
Target:  5'- cCCGACGACaa---GG-UGGUGCUGGUg -3'
miRNA:   3'- -GGCUGCUGgugaaCCaACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119054 0.69 0.70412
Target:  5'- uCCGGCGugCGCaUGuGcgcGGCGCCccGGCu -3'
miRNA:   3'- -GGCUGCugGUGaAC-Caa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 39150 0.69 0.70412
Target:  5'- aUGAUGGCCAuUUUGGggccgcgaGGCggGCCGGCg -3'
miRNA:   3'- gGCUGCUGGU-GAACCaa------CCG--CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 110621 0.69 0.723756
Target:  5'- aCGugGugCGgUuuaaacacaaccUGG-UGGCGCUGGCc -3'
miRNA:   3'- gGCugCugGUgA------------ACCaACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 55337 0.69 0.723756
Target:  5'- aUGACGcGCCGCUUcGggGGCGCCGc- -3'
miRNA:   3'- gGCUGC-UGGUGAAcCaaCCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 9791 0.69 0.733463
Target:  5'- uCCGGgGugUACUUGcacGGCGCCaucGGCg -3'
miRNA:   3'- -GGCUgCugGUGAACcaaCCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 22715 0.69 0.733463
Target:  5'- gUCGuCG-CCACUgUGGccuacUUGuGCGCCGGCc -3'
miRNA:   3'- -GGCuGCuGGUGA-ACC-----AAC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 97887 0.7 0.674244
Target:  5'- gCCGcACGGgCACgUUGcg-GGCGUCGGCg -3'
miRNA:   3'- -GGC-UGCUgGUG-AACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 40097 0.7 0.674244
Target:  5'- gCUGACGcGCCAC-UGGcUGGCGCUGu- -3'
miRNA:   3'- -GGCUGC-UGGUGaACCaACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 30223 0.71 0.612798
Target:  5'- gUGGCGACCACUuuguacgUGGUcgcguUGaCGCUGGCc -3'
miRNA:   3'- gGCUGCUGGUGA-------ACCA-----ACcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75555 0.71 0.612798
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgauagcgcUGGCGUCGGCn -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 115528 0.71 0.612798
Target:  5'- aUGGCGACCAaauggGGUUGGCgGCCuauuccacagaugGGCu -3'
miRNA:   3'- gGCUGCUGGUgaa--CCAACCG-CGG-------------CCG- -5'
6780 3' -57.2 NC_001875.2 + 16281 0.71 0.613805
Target:  5'- cCCGGCGACCGCac-GUccaUGuGCGCCaGCa -3'
miRNA:   3'- -GGCUGCUGGUGaacCA---AC-CGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 75513 0.7 0.632969
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGuuGGUg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 43791 0.7 0.633978
Target:  5'- gCUGGCGACaaACUUGagcGUUGGCacggcuuuGCCGGCu -3'
miRNA:   3'- -GGCUGCUGg-UGAAC---CAACCG--------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 100587 0.7 0.644066
Target:  5'- gUCGACGcgUACgcgGGccgGGCGCCGGCc -3'
miRNA:   3'- -GGCUGCugGUGaa-CCaa-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 42744 0.7 0.664207
Target:  5'- gCGGCGACgCGCaUGGUgagcGGCGCgcucggguCGGCc -3'
miRNA:   3'- gGCUGCUG-GUGaACCAa---CCGCG--------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.