miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 102988 0.68 0.77135
Target:  5'- cCCuGCGGgCACgUGG-UGGCGUgCGGCa -3'
miRNA:   3'- -GGcUGCUgGUGaACCaACCGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 131723 0.69 0.684247
Target:  5'- gCCGAcaCGACUAUUuugaaUGGUgcauUGG-GCCGGCg -3'
miRNA:   3'- -GGCU--GCUGGUGA-----ACCA----ACCgCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 125949 0.75 0.397271
Target:  5'- gCUGuACGACUACaUGGUUcGGCGCauCGGCg -3'
miRNA:   3'- -GGC-UGCUGGUGaACCAA-CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 20740 0.68 0.762038
Target:  5'- gCCGugcACG-CCGCaacaaaaGGUUuucacGGCGCCGGCg -3'
miRNA:   3'- -GGC---UGCuGGUGaa-----CCAA-----CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 61590 0.77 0.291675
Target:  5'- gCGGCGACgGCUcg---GGCGCCGGCg -3'
miRNA:   3'- gGCUGCUGgUGAaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 57689 0.66 0.864015
Target:  5'- gCUGGCGGCgGCg-----GGCGCCGcGCc -3'
miRNA:   3'- -GGCUGCUGgUGaaccaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 125338 0.73 0.476932
Target:  5'- aCGGCGGCCAgCgu-GUUGGCG-CGGCa -3'
miRNA:   3'- gGCUGCUGGU-GaacCAACCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 102493 0.66 0.848733
Target:  5'- cCCGGaaacgGACCACaagcGGUgGGCGCC-GCa -3'
miRNA:   3'- -GGCUg----CUGGUGaa--CCAaCCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 128762 0.66 0.840802
Target:  5'- gCCGAgGACCcCUUcuugGGCcCCGGCa -3'
miRNA:   3'- -GGCUgCUGGuGAAccaaCCGcGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119536 0.67 0.832687
Target:  5'- gCGuuGACCACgcacacGGcgGcGUGCCGGCu -3'
miRNA:   3'- gGCugCUGGUGaa----CCaaC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 94402 0.67 0.832687
Target:  5'- gCGGCGGCUAUUUGGccgccgacuGCGCCacGGCc -3'
miRNA:   3'- gGCUGCUGGUGAACCaac------CGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 98487 0.67 0.815933
Target:  5'- gCGACuGCCGCgugcgUGaUUGGCuGCCGGg -3'
miRNA:   3'- gGCUGcUGGUGa----ACcAACCG-CGGCCg -5'
6780 3' -57.2 NC_001875.2 + 27787 0.68 0.789605
Target:  5'- aCGcCGACCACaaaucGGUUGGgGUugaugCGGCa -3'
miRNA:   3'- gGCuGCUGGUGaa---CCAACCgCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 94253 0.68 0.758281
Target:  5'- gCGGcCGGCCGCggcgcucGCGCCGGCg -3'
miRNA:   3'- gGCU-GCUGGUGaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 129966 0.68 0.743085
Target:  5'- gCGGCGGCgGCggcGGc-GGCGgCGGCa -3'
miRNA:   3'- gGCUGCUGgUGaa-CCaaCCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 95423 0.69 0.723756
Target:  5'- cCCGAC-ACCGC------GGCGCCGGCc -3'
miRNA:   3'- -GGCUGcUGGUGaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 11077 0.69 0.694208
Target:  5'- gCGACGAgCACUUcgcGGUUGGaCGUUuggGGCu -3'
miRNA:   3'- gGCUGCUgGUGAA---CCAACC-GCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 40191 0.7 0.648099
Target:  5'- aCUGGaacCCGCU-GGUgcccaucacggaaauUGGCGCCGGCg -3'
miRNA:   3'- -GGCUgcuGGUGAaCCA---------------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 2648 0.7 0.623889
Target:  5'- aCGgacACGuCUACUUGc--GGCGCCGGCg -3'
miRNA:   3'- gGC---UGCuGGUGAACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 123343 0.72 0.514797
Target:  5'- gCGGCGcCCACacGGacGGCGCCcGGCg -3'
miRNA:   3'- gGCUGCuGGUGaaCCaaCCGCGG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.