miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 59595 0.7 0.63196
Target:  5'- gCCGACGugCGCgagcacgGGCGCUuuGGCg -3'
miRNA:   3'- -GGCUGCugGUGaaccaa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 102493 0.66 0.848733
Target:  5'- cCCGGaaacgGACCACaagcGGUgGGCGCC-GCa -3'
miRNA:   3'- -GGCUg----CUGGUGaa--CCAaCCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 43791 0.7 0.633978
Target:  5'- gCUGGCGACaaACUUGagcGUUGGCacggcuuuGCCGGCu -3'
miRNA:   3'- -GGCUGCUGg-UGAAC---CAACCG--------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 100587 0.7 0.644066
Target:  5'- gUCGACGcgUACgcgGGccgGGCGCCGGCc -3'
miRNA:   3'- -GGCUGCugGUGaa-CCaa-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75651 0.75 0.388959
Target:  5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 40097 0.7 0.674244
Target:  5'- gCUGACGcGCCAC-UGGcUGGCGCUGu- -3'
miRNA:   3'- -GGCUGC-UGGUGaACCaACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 128648 0.68 0.789605
Target:  5'- gCCGcCGcaACCugUcucUGGUgcgcGGcCGCCGGCu -3'
miRNA:   3'- -GGCuGC--UGGugA---ACCAa---CC-GCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 97887 0.7 0.674244
Target:  5'- gCCGcACGGgCACgUUGcg-GGCGUCGGCg -3'
miRNA:   3'- -GGC-UGCUgGUG-AACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 42744 0.7 0.664207
Target:  5'- gCGGCGACgCGCaUGGUgagcGGCGCgcucggguCGGCc -3'
miRNA:   3'- gGCUGCUG-GUGaACCAa---CCGCG--------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 61537 0.68 0.789605
Target:  5'- uUGGCGGCCAUcaugUGGgacacgGuGCGuuGGCa -3'
miRNA:   3'- gGCUGCUGGUGa---ACCaa----C-CGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 11981 0.68 0.789605
Target:  5'- aCUGGCGACgGCgUUGGgcgcgGGUGUggUGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-AACCaa---CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 62525 0.68 0.789605
Target:  5'- uUGACGuCgACUUGGacgcUUGcGCGuuGGCa -3'
miRNA:   3'- gGCUGCuGgUGAACC----AAC-CGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 75358 0.68 0.789605
Target:  5'- aUGGCGuCgGCgUUGGUgaUGGCGuuGGUg -3'
miRNA:   3'- gGCUGCuGgUG-AACCA--ACCGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 111063 0.68 0.789605
Target:  5'- gUCGACGGCUucuACgUGGacGaCGCCGGCg -3'
miRNA:   3'- -GGCUGCUGG---UGaACCaaCcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 84364 0.68 0.789605
Target:  5'- gCCGguaggugcGCGGCCuGCcgGGgcGGCGUCGGUa -3'
miRNA:   3'- -GGC--------UGCUGG-UGaaCCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 111848 0.67 0.80206
Target:  5'- gCCGGCcaggugucuGGCCACgcacgucagcaacGGcgaGGCGCCGGCc -3'
miRNA:   3'- -GGCUG---------CUGGUGaa-----------CCaa-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 122760 0.67 0.807309
Target:  5'- gCCGACucGCCACaggcgcaGUUGGCGgaaaCCGGCg -3'
miRNA:   3'- -GGCUGc-UGGUGaac----CAACCGC----GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 124982 0.68 0.789605
Target:  5'- gCCGcGCGuCCGCUUuacgugcaaGUUGGCGUCGGg -3'
miRNA:   3'- -GGC-UGCuGGUGAAc--------CAACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 117363 0.72 0.514797
Target:  5'- gCCGGCuGGCCGucgGGgaGGCGCCGaGCu -3'
miRNA:   3'- -GGCUG-CUGGUgaaCCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 53870 0.73 0.495701
Target:  5'- aCCGuCGGCCugUUGGUcgugcGGCcGCCgcGGCg -3'
miRNA:   3'- -GGCuGCUGGugAACCAa----CCG-CGG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.