miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 24098 0.68 0.789605
Target:  5'- --uGCGGCCuguaaaaauuACUauugauUGGUUGGCGCaaaGGCg -3'
miRNA:   3'- ggcUGCUGG----------UGA------ACCAACCGCGg--CCG- -5'
6780 3' -57.2 NC_001875.2 + 873 0.68 0.780543
Target:  5'- uCCGuuGACCACUUug--GGCGCgagaaCGGCg -3'
miRNA:   3'- -GGCugCUGGUGAAccaaCCGCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 30639 0.68 0.77135
Target:  5'- gCCGuCGACaaACggcaaGUUgGGCGCCGGCa -3'
miRNA:   3'- -GGCuGCUGg-UGaac--CAA-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 81340 0.68 0.769497
Target:  5'- gCCGcGCGGCgCGC-UGGUgccgcgcgcacGCGCCGGCc -3'
miRNA:   3'- -GGC-UGCUG-GUGaACCAac---------CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 37092 0.68 0.7611
Target:  5'- aCGACaccGCCGCgUGGgugUGcgggcgcggcgccGCGCCGGCg -3'
miRNA:   3'- gGCUGc--UGGUGaACCa--AC-------------CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 114027 0.66 0.878485
Target:  5'- aUGGCGGCCGCgcGGUccagaUGGUagcacGCgGGCu -3'
miRNA:   3'- gGCUGCUGGUGaaCCA-----ACCG-----CGgCCG- -5'
6780 3' -57.2 NC_001875.2 + 109846 0.66 0.878485
Target:  5'- gCCGGCGgauuuGCUGCgcGcGUuugccaagcUGGCGCUGGCg -3'
miRNA:   3'- -GGCUGC-----UGGUGaaC-CA---------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 65434 0.66 0.878485
Target:  5'- uCCGGCGugCACc--GcUGGCGgUCGGUg -3'
miRNA:   3'- -GGCUGCugGUGaacCaACCGC-GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 15925 0.66 0.878485
Target:  5'- aCCGGCaacauGACCcaGC-UGGcggGGCGCCaGCa -3'
miRNA:   3'- -GGCUG-----CUGG--UGaACCaa-CCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 68699 0.66 0.871354
Target:  5'- cCCGugGACC-Cgu-----GCGCCGGCc -3'
miRNA:   3'- -GGCugCUGGuGaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 10664 0.66 0.871354
Target:  5'- gCGGCGGacugCACUUGGcgcaGGCGCUGccGCa -3'
miRNA:   3'- gGCUGCUg---GUGAACCaa--CCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 111771 0.66 0.86771
Target:  5'- gCCGACGACUggugucgcuggugACggcGGUgcacgcggccgacGGCGCCuGGCu -3'
miRNA:   3'- -GGCUGCUGG-------------UGaa-CCAa------------CCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 10865 0.66 0.864015
Target:  5'- aCGACGcggugGCCGCgucGG-UGGCGCUGccGCg -3'
miRNA:   3'- gGCUGC-----UGGUGaa-CCaACCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 21592 0.66 0.859513
Target:  5'- aCGugGACCACUUGaacagcgacaugGGUGUggUGGCu -3'
miRNA:   3'- gGCugCUGGUGAACcaa---------CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 9791 0.69 0.733463
Target:  5'- uCCGGgGugUACUUGcacGGCGCCaucGGCg -3'
miRNA:   3'- -GGCUgCugGUGAACcaaCCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 22715 0.69 0.733463
Target:  5'- gUCGuCG-CCACUgUGGccuacUUGuGCGCCGGCc -3'
miRNA:   3'- -GGCuGCuGGUGA-ACC-----AAC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 95350 0.69 0.733463
Target:  5'- aCCGGCGGCgCACgUGcac-GCGUCGGCg -3'
miRNA:   3'- -GGCUGCUG-GUGaACcaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 13149 0.68 0.743085
Target:  5'- gCGAcaCGACCACgcGGUaGGCGUcgccgaacaCGGCg -3'
miRNA:   3'- gGCU--GCUGGUGaaCCAaCCGCG---------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 89497 0.68 0.743085
Target:  5'- gCCG-CaACCGCUUGGgaaaggugcagUUGGCGUCGcGCc -3'
miRNA:   3'- -GGCuGcUGGUGAACC-----------AACCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 85240 0.68 0.752613
Target:  5'- gUCGACGAgCGCg-GGUUccGCGCuCGGCg -3'
miRNA:   3'- -GGCUGCUgGUGaaCCAAc-CGCG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.