miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 72574 0.66 0.856472
Target:  5'- gCG-CGGgCGCUgcgGGUgcgGGCGCUgcgGGCg -3'
miRNA:   3'- gGCuGCUgGUGAa--CCAa--CCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 48386 0.66 0.856472
Target:  5'- uCCGACG-CgGCgaca--GGUGCCGGCu -3'
miRNA:   3'- -GGCUGCuGgUGaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 110681 0.66 0.855707
Target:  5'- gCCGaaaagaaGCGGCCGC--GGagGGCGCCGcGUu -3'
miRNA:   3'- -GGC-------UGCUGGUGaaCCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 83368 0.66 0.851852
Target:  5'- gUCGGCGGCgcuaaaCACUUgcaaacaguaucgcgGGUUGGuCGCCauGGCg -3'
miRNA:   3'- -GGCUGCUG------GUGAA---------------CCAACC-GCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 102493 0.66 0.848733
Target:  5'- cCCGGaaacgGACCACaagcGGUgGGCGCC-GCa -3'
miRNA:   3'- -GGCUg----CUGGUGaa--CCAaCCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 58022 0.66 0.848733
Target:  5'- aCCGAuaCGACUACaacgUGGgcGGCGCgCuGCc -3'
miRNA:   3'- -GGCU--GCUGGUGa---ACCaaCCGCG-GcCG- -5'
6780 3' -57.2 NC_001875.2 + 73706 0.66 0.848733
Target:  5'- gCGGCGGCUGCggcuGUUGGgGuuGGUc -3'
miRNA:   3'- gGCUGCUGGUGaac-CAACCgCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 105212 0.66 0.848733
Target:  5'- gCCGugGcGCCcucgucauGCUUGGgcggccugucaUGGCGCCaGGUg -3'
miRNA:   3'- -GGCugC-UGG--------UGAACCa----------ACCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 65769 0.66 0.848733
Target:  5'- gCCGGCGGCugggcgagCACgcgcgcGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUG--------GUGaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 31573 0.66 0.848733
Target:  5'- gUCG-CGugCACgaguuaagggUGGUguccGGCGCCGuGCc -3'
miRNA:   3'- -GGCuGCugGUGa---------ACCAa---CCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 127044 0.66 0.840802
Target:  5'- gCUGGCGACag-------GGCGCCGGCu -3'
miRNA:   3'- -GGCUGCUGgugaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 128762 0.66 0.840802
Target:  5'- gCCGAgGACCcCUUcuugGGCcCCGGCa -3'
miRNA:   3'- -GGCUgCUGGuGAAccaaCCGcGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 114741 0.66 0.840802
Target:  5'- --uGCGGCCGCcag--UGGCGCgCGGCu -3'
miRNA:   3'- ggcUGCUGGUGaaccaACCGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 31238 0.66 0.840802
Target:  5'- aCaGCGGCCGC--GGccGGCGCCcGGCc -3'
miRNA:   3'- gGcUGCUGGUGaaCCaaCCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 43985 0.66 0.839999
Target:  5'- gCCGACcGCCACggacagcccgacgGGCGCCGuGCc -3'
miRNA:   3'- -GGCUGcUGGUGaaccaa-------CCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 50723 0.67 0.832687
Target:  5'- gCCGGCGACUACUguuacUGGCccaaCUGGCc -3'
miRNA:   3'- -GGCUGCUGGUGAacca-ACCGc---GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 94402 0.67 0.832687
Target:  5'- gCGGCGGCUAUUUGGccgccgacuGCGCCacGGCc -3'
miRNA:   3'- gGCUGCUGGUGAACCaac------CGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 119536 0.67 0.832687
Target:  5'- gCGuuGACCACgcacacGGcgGcGUGCCGGCu -3'
miRNA:   3'- gGCugCUGGUGaa----CCaaC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 113667 0.67 0.832687
Target:  5'- gCCGGCaccGCCACagUGGc-GGCGUCGcGCg -3'
miRNA:   3'- -GGCUGc--UGGUGa-ACCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 41140 0.67 0.832687
Target:  5'- aCCGGCGGCC---------GCGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGugaaccaacCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.