Results 21 - 40 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 121929 | 0.69 | 0.81191 |
Target: 5'- gCGGCCcGCGCGCc---AGucGCGAGUa -3' miRNA: 3'- -GCCGGcCGCGCGuuuuUCuuCGCUUA- -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 131512 | 0.69 | 0.838295 |
Target: 5'- gCGGCgcgCGGUGCaGCGGcuGGAAGCGGc- -3' miRNA: 3'- -GCCG---GCCGCG-CGUUuuUCUUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 131298 | 0.69 | 0.820893 |
Target: 5'- -aGCUGGacgcCGCGCAAAAAGAAGCu--- -3' miRNA: 3'- gcCGGCC----GCGCGUUUUUCUUCGcuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 74376 | 0.69 | 0.802752 |
Target: 5'- gCGGCCgcGGCGCGUuc--AGgcGCGggUa -3' miRNA: 3'- -GCCGG--CCGCGCGuuuuUCuuCGCuuA- -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 93780 | 0.69 | 0.81191 |
Target: 5'- aCGGgCGGCaGCGCAAAAAGuggaugauGGCGu-- -3' miRNA: 3'- -GCCgGCCG-CGCGUUUUUCu-------UCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 100843 | 0.68 | 0.880351 |
Target: 5'- uCGGCCGcGCGCGCGuaaucuugcuuuuuGAGcGCGAGg -3' miRNA: 3'- -GCCGGC-CGCGCGUuuuu----------CUU-CGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 98899 | 0.68 | 0.878141 |
Target: 5'- uGGCgagCGGCGCGCAAAcuGAcGCGc-- -3' miRNA: 3'- gCCG---GCCGCGCGUUUuuCUuCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 93197 | 0.68 | 0.878141 |
Target: 5'- cCGGCCaGCGCGCAAuacGcGGCGu-- -3' miRNA: 3'- -GCCGGcCGCGCGUUuuuCuUCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 3108 | 0.68 | 0.862867 |
Target: 5'- gGGCgCGGCucgcgGCGCAGAccuGGGcGGCGAAg -3' miRNA: 3'- gCCG-GCCG-----CGCGUUU---UUCuUCGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 64727 | 0.68 | 0.870619 |
Target: 5'- uGGCCaaGGCGgGCGAcguGGGcGAAGCGAu- -3' miRNA: 3'- gCCGG--CCGCgCGUU---UUU-CUUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 118320 | 0.68 | 0.870619 |
Target: 5'- gCGGCCGGcCGCGCGcu--GcAGGUGAu- -3' miRNA: 3'- -GCCGGCC-GCGCGUuuuuC-UUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 79100 | 0.68 | 0.870619 |
Target: 5'- aCGGCa-GCGCGCAAAugcuGGCGAu- -3' miRNA: 3'- -GCCGgcCGCGCGUUUuucuUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 11631 | 0.68 | 0.878141 |
Target: 5'- gGGuuGGCGCGCAucguuguGuucAGCGGAa -3' miRNA: 3'- gCCggCCGCGCGUuuuu---Cu--UCGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 58897 | 0.68 | 0.854891 |
Target: 5'- aGGCCGcgaacGCGCGCuacGAAGccGCGGAc -3' miRNA: 3'- gCCGGC-----CGCGCGuu-UUUCuuCGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 10632 | 0.68 | 0.870619 |
Target: 5'- cCGGCCGGUGCcgcccagcguGCAGuacuuGGGcGGCGGAc -3' miRNA: 3'- -GCCGGCCGCG----------CGUUu----UUCuUCGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 67705 | 0.68 | 0.885426 |
Target: 5'- uGGCCGGCG-GCcuGAGGggGUu--- -3' miRNA: 3'- gCCGGCCGCgCGuuUUUCuuCGcuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 57578 | 0.68 | 0.878141 |
Target: 5'- cCGGCgCGGCGuCGCGcuGuccAGAAGCGu-- -3' miRNA: 3'- -GCCG-GCCGC-GCGUuuU---UCUUCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 80617 | 0.68 | 0.870619 |
Target: 5'- aCGGUgGGCGCGCGGAAcGcgcgcucgacGGGCGGc- -3' miRNA: 3'- -GCCGgCCGCGCGUUUUuC----------UUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 19949 | 0.68 | 0.885426 |
Target: 5'- gCGGCCGGCGCGaCGGuccGGccGGCGc-- -3' miRNA: 3'- -GCCGGCCGCGC-GUUuuuCU--UCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 32394 | 0.68 | 0.878141 |
Target: 5'- aGGgCGGCGaCGCAAAAGuuguGGGCGAc- -3' miRNA: 3'- gCCgGCCGC-GCGUUUUUc---UUCGCUua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home