miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 80617 0.68 0.870619
Target:  5'- aCGGUgGGCGCGCGGAAcGcgcgcucgacGGGCGGc- -3'
miRNA:   3'- -GCCGgCCGCGCGUUUUuC----------UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 81998 1.06 0.005983
Target:  5'- cCGGCCGGCGCGCAAAAAGAAGCGAAUc -3'
miRNA:   3'- -GCCGGCCGCGCGUUUUUCUUCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 82309 0.66 0.944512
Target:  5'- uGGCgCGGCGCGCAAuucuacuacGAGcuGCuGAAg -3'
miRNA:   3'- gCCG-GCCGCGCGUUu--------UUCuuCG-CUUa -5'
6780 5' -53.6 NC_001875.2 + 83003 0.68 0.885426
Target:  5'- -cGCCGGCGgGCuu---GAAGCGGc- -3'
miRNA:   3'- gcCGGCCGCgCGuuuuuCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 84410 0.66 0.922233
Target:  5'- uCGGCggCGGCGCGUAuaggugccaucggcGGAucGGGAGCGGc- -3'
miRNA:   3'- -GCCG--GCCGCGCGU--------------UUU--UCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 87668 0.66 0.949017
Target:  5'- aCGGUCaGCGCGUgcgaaaucGAGGAG-AGCGAc- -3'
miRNA:   3'- -GCCGGcCGCGCG--------UUUUUCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 90038 0.7 0.754661
Target:  5'- gGcGCCGGCGCGCGugcc--GGCGGAa -3'
miRNA:   3'- gC-CGGCCGCGCGUuuuucuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 93197 0.68 0.878141
Target:  5'- cCGGCCaGCGCGCAAuacGcGGCGu-- -3'
miRNA:   3'- -GCCGGcCGCGCGUUuuuCuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 93780 0.69 0.81191
Target:  5'- aCGGgCGGCaGCGCAAAAAGuggaugauGGCGu-- -3'
miRNA:   3'- -GCCgGCCG-CGCGUUUUUCu-------UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 95409 0.66 0.944512
Target:  5'- gCGcGCCGGCGuCGCAAAgguAAGGccucGCGGc- -3'
miRNA:   3'- -GC-CGGCCGC-GCGUUU---UUCUu---CGCUua -5'
6780 5' -53.6 NC_001875.2 + 95705 0.67 0.89247
Target:  5'- aCGGCUcgGGCGCGCuGAAAc--GCGAAg -3'
miRNA:   3'- -GCCGG--CCGCGCGuUUUUcuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 98396 0.66 0.943111
Target:  5'- uGGCCGGcCGCGCuGAacgcgcucacgcacGAcauugcGGAAGCGGGa -3'
miRNA:   3'- gCCGGCC-GCGCG-UU--------------UU------UCUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 98899 0.68 0.878141
Target:  5'- uGGCgagCGGCGCGCAAAcuGAcGCGc-- -3'
miRNA:   3'- gCCG---GCCGCGCGUUUuuCUuCGCuua -5'
6780 5' -53.6 NC_001875.2 + 99923 0.67 0.905818
Target:  5'- gGGCCGcGCGCGCGGu--GcAGCGc-- -3'
miRNA:   3'- gCCGGC-CGCGCGUUuuuCuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 100146 0.67 0.89247
Target:  5'- cCGG-CGGCGCGCA---AGcGGCGGu- -3'
miRNA:   3'- -GCCgGCCGCGCGUuuuUCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 100266 0.73 0.587435
Target:  5'- uGGgCGGCGCGCAA--GGAAGCc--- -3'
miRNA:   3'- gCCgGCCGCGCGUUuuUCUUCGcuua -5'
6780 5' -53.6 NC_001875.2 + 100843 0.68 0.880351
Target:  5'- uCGGCCGcGCGCGCGuaaucuugcuuuuuGAGcGCGAGg -3'
miRNA:   3'- -GCCGGC-CGCGCGUuuuu----------CUU-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 102906 0.72 0.682739
Target:  5'- gCGGCCGGC-CGUu----GAAGCGGAg -3'
miRNA:   3'- -GCCGGCCGcGCGuuuuuCUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 103991 0.75 0.514887
Target:  5'- uGGgCGGCGUGCAAAuGGAaAGCGAc- -3'
miRNA:   3'- gCCgGCCGCGCGUUUuUCU-UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 109116 0.71 0.743647
Target:  5'- uGGCCGGCGCaCAAGuAGGccacaguGGCGAc- -3'
miRNA:   3'- gCCGGCCGCGcGUUUuUCU-------UCGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.