miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 110522 0.67 0.918156
Target:  5'- aGGCgGGCcccGCGCAAuuuGAGGUGGu- -3'
miRNA:   3'- gCCGgCCG---CGCGUUuuuCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 110654 0.7 0.781072
Target:  5'- uGGCCGugccGCGCGacgacgauuuuugcCGAAAAGAAGCGGc- -3'
miRNA:   3'- gCCGGC----CGCGC--------------GUUUUUCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 112847 0.66 0.939753
Target:  5'- gCGGCCuGCGCGCAcu--GccGUGGAUa -3'
miRNA:   3'- -GCCGGcCGCGCGUuuuuCuuCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 113614 0.66 0.944512
Target:  5'- gCGGCgGGcCGCGgCGGcAAGAgcGGCGAc- -3'
miRNA:   3'- -GCCGgCC-GCGC-GUUuUUCU--UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 117337 0.67 0.89247
Target:  5'- aCGGCgCGGCGCGgGcGAAccGGCGGGc -3'
miRNA:   3'- -GCCG-GCCGCGCgUuUUUcuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 117937 0.67 0.899269
Target:  5'- aGGCCGGCGUGCGcGccGccGCGu-- -3'
miRNA:   3'- gCCGGCCGCGCGUuUuuCuuCGCuua -5'
6780 5' -53.6 NC_001875.2 + 118320 0.68 0.870619
Target:  5'- gCGGCCGGcCGCGCGcu--GcAGGUGAu- -3'
miRNA:   3'- -GCCGGCC-GCGCGUuuuuC-UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 119427 0.67 0.89247
Target:  5'- aCGGCCugcuuGGCGCGCGGcAAacAGCGGc- -3'
miRNA:   3'- -GCCGG-----CCGCGCGUUuUUcuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 120062 0.67 0.89247
Target:  5'- uGGUCaGGCGCGCcgcGAGGuuGGCGAu- -3'
miRNA:   3'- gCCGG-CCGCGCGuuuUUCU--UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 121929 0.69 0.81191
Target:  5'- gCGGCCcGCGCGCc---AGucGCGAGUa -3'
miRNA:   3'- -GCCGGcCGCGCGuuuuUCuuCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 122141 0.8 0.282363
Target:  5'- gCGGCCGGCGCGCAcGAc--GGCGAGc -3'
miRNA:   3'- -GCCGGCCGCGCGUuUUucuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 122808 0.7 0.754661
Target:  5'- gCGGCCGGCGgcuccaaaCGCAAGGcguccGAGGUGGAc -3'
miRNA:   3'- -GCCGGCCGC--------GCGUUUUu----CUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 127891 0.66 0.929469
Target:  5'- aCGGUUugugGGCGCGCAuuuGAAcAAGCGGGc -3'
miRNA:   3'- -GCCGG----CCGCGCGUu--UUUcUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 131298 0.69 0.820893
Target:  5'- -aGCUGGacgcCGCGCAAAAAGAAGCu--- -3'
miRNA:   3'- gcCGGCC----GCGCGUUUUUCUUCGcuua -5'
6780 5' -53.6 NC_001875.2 + 131512 0.69 0.838295
Target:  5'- gCGGCgcgCGGUGCaGCGGcuGGAAGCGGc- -3'
miRNA:   3'- -GCCG---GCCGCG-CGUUuuUCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 131752 0.69 0.820893
Target:  5'- gGGCCGGCG-GCGGAucG-GGCGGc- -3'
miRNA:   3'- gCCGGCCGCgCGUUUuuCuUCGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.