Results 21 - 40 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 100266 | 0.73 | 0.587435 |
Target: 5'- uGGgCGGCGCGCAA--GGAAGCc--- -3' miRNA: 3'- gCCgGCCGCGCGUUuuUCUUCGcuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 100146 | 0.67 | 0.89247 |
Target: 5'- cCGG-CGGCGCGCA---AGcGGCGGu- -3' miRNA: 3'- -GCCgGCCGCGCGUuuuUCuUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 99923 | 0.67 | 0.905818 |
Target: 5'- gGGCCGcGCGCGCGGu--GcAGCGc-- -3' miRNA: 3'- gCCGGC-CGCGCGUUuuuCuUCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 98899 | 0.68 | 0.878141 |
Target: 5'- uGGCgagCGGCGCGCAAAcuGAcGCGc-- -3' miRNA: 3'- gCCG---GCCGCGCGUUUuuCUuCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 98396 | 0.66 | 0.943111 |
Target: 5'- uGGCCGGcCGCGCuGAacgcgcucacgcacGAcauugcGGAAGCGGGa -3' miRNA: 3'- gCCGGCC-GCGCG-UU--------------UU------UCUUCGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 95705 | 0.67 | 0.89247 |
Target: 5'- aCGGCUcgGGCGCGCuGAAAc--GCGAAg -3' miRNA: 3'- -GCCGG--CCGCGCGuUUUUcuuCGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 95409 | 0.66 | 0.944512 |
Target: 5'- gCGcGCCGGCGuCGCAAAgguAAGGccucGCGGc- -3' miRNA: 3'- -GC-CGGCCGC-GCGUUU---UUCUu---CGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 93780 | 0.69 | 0.81191 |
Target: 5'- aCGGgCGGCaGCGCAAAAAGuggaugauGGCGu-- -3' miRNA: 3'- -GCCgGCCG-CGCGUUUUUCu-------UCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 93197 | 0.68 | 0.878141 |
Target: 5'- cCGGCCaGCGCGCAAuacGcGGCGu-- -3' miRNA: 3'- -GCCGGcCGCGCGUUuuuCuUCGCuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 90038 | 0.7 | 0.754661 |
Target: 5'- gGcGCCGGCGCGCGugcc--GGCGGAa -3' miRNA: 3'- gC-CGGCCGCGCGUuuuucuUCGCUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 87668 | 0.66 | 0.949017 |
Target: 5'- aCGGUCaGCGCGUgcgaaaucGAGGAG-AGCGAc- -3' miRNA: 3'- -GCCGGcCGCGCG--------UUUUUCuUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 84410 | 0.66 | 0.922233 |
Target: 5'- uCGGCggCGGCGCGUAuaggugccaucggcGGAucGGGAGCGGc- -3' miRNA: 3'- -GCCG--GCCGCGCGU--------------UUU--UCUUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 83003 | 0.68 | 0.885426 |
Target: 5'- -cGCCGGCGgGCuu---GAAGCGGc- -3' miRNA: 3'- gcCGGCCGCgCGuuuuuCUUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 82309 | 0.66 | 0.944512 |
Target: 5'- uGGCgCGGCGCGCAAuucuacuacGAGcuGCuGAAg -3' miRNA: 3'- gCCG-GCCGCGCGUUu--------UUCuuCG-CUUa -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 81998 | 1.06 | 0.005983 |
Target: 5'- cCGGCCGGCGCGCAAAAAGAAGCGAAUc -3' miRNA: 3'- -GCCGGCCGCGCGUUUUUCUUCGCUUA- -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 80617 | 0.68 | 0.870619 |
Target: 5'- aCGGUgGGCGCGCGGAAcGcgcgcucgacGGGCGGc- -3' miRNA: 3'- -GCCGgCCGCGCGUUUUuC----------UUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 79827 | 0.67 | 0.899269 |
Target: 5'- cCGGCaugguGGUGCcaGCAAGAAGggGCa--- -3' miRNA: 3'- -GCCGg----CCGCG--CGUUUUUCuuCGcuua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 79100 | 0.68 | 0.870619 |
Target: 5'- aCGGCa-GCGCGCAAAugcuGGCGAu- -3' miRNA: 3'- -GCCGgcCGCGCGUUUuucuUCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 76890 | 0.72 | 0.651038 |
Target: 5'- cCGGCaaacGCGCGCGcAAAGggGCGGc- -3' miRNA: 3'- -GCCGgc--CGCGCGUuUUUCuuCGCUua -5' |
|||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 74376 | 0.69 | 0.802752 |
Target: 5'- gCGGCCgcGGCGCGUuc--AGgcGCGggUa -3' miRNA: 3'- -GCCGG--CCGCGCGuuuuUCuuCGCuuA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home