Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 79100 | 0.68 | 0.870619 |
Target: 5'- aCGGCa-GCGCGCAAAugcuGGCGAu- -3' miRNA: 3'- -GCCGgcCGCGCGUUUuucuUCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 11631 | 0.68 | 0.878141 |
Target: 5'- gGGuuGGCGCGCAucguuguGuucAGCGGAa -3' miRNA: 3'- gCCggCCGCGCGUuuuu---Cu--UCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 57578 | 0.68 | 0.878141 |
Target: 5'- cCGGCgCGGCGuCGCGcuGuccAGAAGCGu-- -3' miRNA: 3'- -GCCG-GCCGC-GCGUuuU---UCUUCGCuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 100843 | 0.68 | 0.880351 |
Target: 5'- uCGGCCGcGCGCGCGuaaucuugcuuuuuGAGcGCGAGg -3' miRNA: 3'- -GCCGGC-CGCGCGUuuuu----------CUU-CGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 19949 | 0.68 | 0.885426 |
Target: 5'- gCGGCCGGCGCGaCGGuccGGccGGCGc-- -3' miRNA: 3'- -GCCGGCCGCGC-GUUuuuCU--UCGCuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 67705 | 0.68 | 0.885426 |
Target: 5'- uGGCCGGCG-GCcuGAGGggGUu--- -3' miRNA: 3'- gCCGGCCGCgCGuuUUUCuuCGcuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 83003 | 0.68 | 0.885426 |
Target: 5'- -cGCCGGCGgGCuu---GAAGCGGc- -3' miRNA: 3'- gcCGGCCGCgCGuuuuuCUUCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 120062 | 0.67 | 0.89247 |
Target: 5'- uGGUCaGGCGCGCcgcGAGGuuGGCGAu- -3' miRNA: 3'- gCCGG-CCGCGCGuuuUUCU--UCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 121929 | 0.69 | 0.81191 |
Target: 5'- gCGGCCcGCGCGCc---AGucGCGAGUa -3' miRNA: 3'- -GCCGGcCGCGCGuuuuUCuuCGCUUA- -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 93780 | 0.69 | 0.81191 |
Target: 5'- aCGGgCGGCaGCGCAAAAAGuggaugauGGCGu-- -3' miRNA: 3'- -GCCgGCCG-CGCGUUUUUCu-------UCGCuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 70352 | 0.84 | 0.154543 |
Target: 5'- cCGaGCCGGCGCGCAAAAGGGugaaggaaaacuacaAGCGggUg -3' miRNA: 3'- -GC-CGGCCGCGCGUUUUUCU---------------UCGCuuA- -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 62399 | 0.76 | 0.42757 |
Target: 5'- uGGCCGGCGCGCAAAcgccGGCGu-- -3' miRNA: 3'- gCCGGCCGCGCGUUUuucuUCGCuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 60208 | 0.74 | 0.576909 |
Target: 5'- uGcGCCGGCG-GCAGAuuGAAGCGGc- -3' miRNA: 3'- gC-CGGCCGCgCGUUUuuCUUCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 76890 | 0.72 | 0.651038 |
Target: 5'- cCGGCaaacGCGCGCGcAAAGggGCGGc- -3' miRNA: 3'- -GCCGgc--CGCGCGUuUUUCuuCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 102906 | 0.72 | 0.682739 |
Target: 5'- gCGGCCGGC-CGUu----GAAGCGGAg -3' miRNA: 3'- -GCCGGCCGcGCGuuuuuCUUCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 61736 | 0.71 | 0.703664 |
Target: 5'- uCGGCCGGCugcgGCGCAAAGGGGucaaacguuGGCa--- -3' miRNA: 3'- -GCCGGCCG----CGCGUUUUUCU---------UCGcuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 109116 | 0.71 | 0.743647 |
Target: 5'- uGGCCGGCGCaCAAGuAGGccacaguGGCGAc- -3' miRNA: 3'- gCCGGCCGCGcGUUUuUCU-------UCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 90038 | 0.7 | 0.754661 |
Target: 5'- gGcGCCGGCGCGCGugcc--GGCGGAa -3' miRNA: 3'- gC-CGGCCGCGCGUuuuucuUCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 46180 | 0.7 | 0.761598 |
Target: 5'- aGGCCGGCGCGCccacAAuuaagcuaaaucgcGAGGAcacGGUGAAc -3' miRNA: 3'- gCCGGCCGCGCG----UU--------------UUUCU---UCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 5534 | 0.7 | 0.783946 |
Target: 5'- cCGGCCgccguugaGGCGCGCGuuAAGGugccagucacGGCGAc- -3' miRNA: 3'- -GCCGG--------CCGCGCGUuuUUCU----------UCGCUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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