miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 60208 0.74 0.576909
Target:  5'- uGcGCCGGCG-GCAGAuuGAAGCGGc- -3'
miRNA:   3'- gC-CGGCCGCgCGUUUuuCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 76890 0.72 0.651038
Target:  5'- cCGGCaaacGCGCGCGcAAAGggGCGGc- -3'
miRNA:   3'- -GCCGgc--CGCGCGUuUUUCuuCGCUua -5'
6780 5' -53.6 NC_001875.2 + 102906 0.72 0.682739
Target:  5'- gCGGCCGGC-CGUu----GAAGCGGAg -3'
miRNA:   3'- -GCCGGCCGcGCGuuuuuCUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 61736 0.71 0.703664
Target:  5'- uCGGCCGGCugcgGCGCAAAGGGGucaaacguuGGCa--- -3'
miRNA:   3'- -GCCGGCCG----CGCGUUUUUCU---------UCGcuua -5'
6780 5' -53.6 NC_001875.2 + 109116 0.71 0.743647
Target:  5'- uGGCCGGCGCaCAAGuAGGccacaguGGCGAc- -3'
miRNA:   3'- gCCGGCCGCGcGUUUuUCU-------UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 90038 0.7 0.754661
Target:  5'- gGcGCCGGCGCGCGugcc--GGCGGAa -3'
miRNA:   3'- gC-CGGCCGCGCGUuuuucuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 46180 0.7 0.761598
Target:  5'- aGGCCGGCGCGCccacAAuuaagcuaaaucgcGAGGAcacGGUGAAc -3'
miRNA:   3'- gCCGGCCGCGCG----UU--------------UUUCU---UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 5534 0.7 0.783946
Target:  5'- cCGGCCgccguugaGGCGCGCGuuAAGGugccagucacGGCGAc- -3'
miRNA:   3'- -GCCGG--------CCGCGCGUuuUUCU----------UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 93780 0.69 0.81191
Target:  5'- aCGGgCGGCaGCGCAAAAAGuggaugauGGCGu-- -3'
miRNA:   3'- -GCCgGCCG-CGCGUUUUUCu-------UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 121929 0.69 0.81191
Target:  5'- gCGGCCcGCGCGCc---AGucGCGAGUa -3'
miRNA:   3'- -GCCGGcCGCGCGuuuuUCuuCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 131752 0.69 0.820893
Target:  5'- gGGCCGGCG-GCGGAucG-GGCGGc- -3'
miRNA:   3'- gCCGGCCGCgCGUUUuuCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 3108 0.68 0.862867
Target:  5'- gGGCgCGGCucgcgGCGCAGAccuGGGcGGCGAAg -3'
miRNA:   3'- gCCG-GCCG-----CGCGUUU---UUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 64727 0.68 0.870619
Target:  5'- uGGCCaaGGCGgGCGAcguGGGcGAAGCGAu- -3'
miRNA:   3'- gCCGG--CCGCgCGUU---UUU-CUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 79100 0.68 0.870619
Target:  5'- aCGGCa-GCGCGCAAAugcuGGCGAu- -3'
miRNA:   3'- -GCCGgcCGCGCGUUUuucuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 11631 0.68 0.878141
Target:  5'- gGGuuGGCGCGCAucguuguGuucAGCGGAa -3'
miRNA:   3'- gCCggCCGCGCGUuuuu---Cu--UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 81998 1.06 0.005983
Target:  5'- cCGGCCGGCGCGCAAAAAGAAGCGAAUc -3'
miRNA:   3'- -GCCGGCCGCGCGUUUUUCUUCGCUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.