miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 57578 0.68 0.878141
Target:  5'- cCGGCgCGGCGuCGCGcuGuccAGAAGCGu-- -3'
miRNA:   3'- -GCCG-GCCGC-GCGUuuU---UCUUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 109116 0.71 0.743647
Target:  5'- uGGCCGGCGCaCAAGuAGGccacaguGGCGAc- -3'
miRNA:   3'- gCCGGCCGCGcGUUUuUCU-------UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 112847 0.66 0.939753
Target:  5'- gCGGCCuGCGCGCAcu--GccGUGGAUa -3'
miRNA:   3'- -GCCGGcCGCGCGUuuuuCuuCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 99923 0.67 0.905818
Target:  5'- gGGCCGcGCGCGCGGu--GcAGCGc-- -3'
miRNA:   3'- gCCGGC-CGCGCGUUuuuCuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 100843 0.68 0.880351
Target:  5'- uCGGCCGcGCGCGCGuaaucuugcuuuuuGAGcGCGAGg -3'
miRNA:   3'- -GCCGGC-CGCGCGUuuuu----------CUU-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 61736 0.71 0.703664
Target:  5'- uCGGCCGGCugcgGCGCAAAGGGGucaaacguuGGCa--- -3'
miRNA:   3'- -GCCGGCCG----CGCGUUUUUCU---------UCGcuua -5'
6780 5' -53.6 NC_001875.2 + 119427 0.67 0.89247
Target:  5'- aCGGCCugcuuGGCGCGCGGcAAacAGCGGc- -3'
miRNA:   3'- -GCCGG-----CCGCGCGUUuUUcuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 102906 0.72 0.682739
Target:  5'- gCGGCCGGC-CGUu----GAAGCGGAg -3'
miRNA:   3'- -GCCGGCCGcGCGuuuuuCUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 76890 0.72 0.651038
Target:  5'- cCGGCaaacGCGCGCGcAAAGggGCGGc- -3'
miRNA:   3'- -GCCGgc--CGCGCGUuUUUCuuCGCUua -5'
6780 5' -53.6 NC_001875.2 + 3108 0.68 0.862867
Target:  5'- gGGCgCGGCucgcgGCGCAGAccuGGGcGGCGAAg -3'
miRNA:   3'- gCCG-GCCG-----CGCGUUU---UUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 19949 0.68 0.885426
Target:  5'- gCGGCCGGCGCGaCGGuccGGccGGCGc-- -3'
miRNA:   3'- -GCCGGCCGCGC-GUUuuuCU--UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 87668 0.66 0.949017
Target:  5'- aCGGUCaGCGCGUgcgaaaucGAGGAG-AGCGAc- -3'
miRNA:   3'- -GCCGGcCGCGCG--------UUUUUCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 120062 0.67 0.89247
Target:  5'- uGGUCaGGCGCGCcgcGAGGuuGGCGAu- -3'
miRNA:   3'- gCCGG-CCGCGCGuuuUUCU--UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 32488 0.67 0.912115
Target:  5'- uGGCgGGCGCGCcc-AAGuugcGCGGAc -3'
miRNA:   3'- gCCGgCCGCGCGuuuUUCuu--CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 50486 0.66 0.929469
Target:  5'- gCGGCCGGCGCGUgcgc----GCGGc- -3'
miRNA:   3'- -GCCGGCCGCGCGuuuuucuuCGCUua -5'
6780 5' -53.6 NC_001875.2 + 98396 0.66 0.943111
Target:  5'- uGGCCGGcCGCGCuGAacgcgcucacgcacGAcauugcGGAAGCGGGa -3'
miRNA:   3'- gCCGGCC-GCGCG-UU--------------UU------UCUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 64727 0.68 0.870619
Target:  5'- uGGCCaaGGCGgGCGAcguGGGcGAAGCGAu- -3'
miRNA:   3'- gCCGG--CCGCgCGUU---UUU-CUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 90038 0.7 0.754661
Target:  5'- gGcGCCGGCGCGCGugcc--GGCGGAa -3'
miRNA:   3'- gC-CGGCCGCGCGUuuuucuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 93780 0.69 0.81191
Target:  5'- aCGGgCGGCaGCGCAAAAAGuggaugauGGCGu-- -3'
miRNA:   3'- -GCCgGCCG-CGCGUUUUUCu-------UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 59011 0.66 0.929469
Target:  5'- gCGaGCUGGCcacugaaaacgaGCGCcu-GAGggGCGAAa -3'
miRNA:   3'- -GC-CGGCCG------------CGCGuuuUUCuuCGCUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.