Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6780 | 5' | -53.6 | NC_001875.2 | + | 131512 | 0.69 | 0.838295 |
Target: 5'- gCGGCgcgCGGUGCaGCGGcuGGAAGCGGc- -3' miRNA: 3'- -GCCG---GCCGCG-CGUUuuUCUUCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 100266 | 0.73 | 0.587435 |
Target: 5'- uGGgCGGCGCGCAA--GGAAGCc--- -3' miRNA: 3'- gCCgGCCGCGCGUUuuUCUUCGcuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 49860 | 0.7 | 0.752669 |
Target: 5'- cCGGCCGGCGCGCcuugcc-GGCGc-- -3' miRNA: 3'- -GCCGGCCGCGCGuuuuucuUCGCuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 131298 | 0.69 | 0.820893 |
Target: 5'- -aGCUGGacgcCGCGCAAAAAGAAGCu--- -3' miRNA: 3'- gcCGGCC----GCGCGUUUUUCUUCGcuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 122808 | 0.7 | 0.754661 |
Target: 5'- gCGGCCGGCGgcuccaaaCGCAAGGcguccGAGGUGGAc -3' miRNA: 3'- -GCCGGCCGC--------GCGUUUUu----CUUCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 39931 | 0.66 | 0.938771 |
Target: 5'- gCGGCCuGCGCGCAAuuugcgcGCGGu- -3' miRNA: 3'- -GCCGGcCGCGCGUUuuucuu-CGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 58897 | 0.68 | 0.854891 |
Target: 5'- aGGCCGcgaacGCGCGCuacGAAGccGCGGAc -3' miRNA: 3'- gCCGGC-----CGCGCGuu-UUUCuuCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 10632 | 0.68 | 0.870619 |
Target: 5'- cCGGCCGGUGCcgcccagcguGCAGuacuuGGGcGGCGGAc -3' miRNA: 3'- -GCCGGCCGCG----------CGUUu----UUCuUCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 80617 | 0.68 | 0.870619 |
Target: 5'- aCGGUgGGCGCGCGGAAcGcgcgcucgacGGGCGGc- -3' miRNA: 3'- -GCCGgCCGCGCGUUUUuC----------UUCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 5539 | 0.66 | 0.923941 |
Target: 5'- uCGGaggaGGaCGCGCGGcaauucGAGGAGCGAAUa -3' miRNA: 3'- -GCCgg--CC-GCGCGUUu-----UUCUUCGCUUA- -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 84410 | 0.66 | 0.922233 |
Target: 5'- uCGGCggCGGCGCGUAuaggugccaucggcGGAucGGGAGCGGc- -3' miRNA: 3'- -GCCG--GCCGCGCGU--------------UUU--UCUUCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 110522 | 0.67 | 0.918156 |
Target: 5'- aGGCgGGCcccGCGCAAuuuGAGGUGGu- -3' miRNA: 3'- gCCGgCCG---CGCGUUuuuCUUCGCUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 59083 | 0.67 | 0.918156 |
Target: 5'- uGGCCGGCGCGgAAAcGGuuuccAGGCuGAc- -3' miRNA: 3'- gCCGGCCGCGCgUUUuUC-----UUCG-CUua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 38455 | 0.67 | 0.912115 |
Target: 5'- aGuGCCGGCGCGCGcu-AGAauuggugcAGCGcGUg -3' miRNA: 3'- gC-CGGCCGCGCGUuuuUCU--------UCGCuUA- -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 79827 | 0.67 | 0.899269 |
Target: 5'- cCGGCaugguGGUGCcaGCAAGAAGggGCa--- -3' miRNA: 3'- -GCCGg----CCGCG--CGUUUUUCuuCGcuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 35792 | 0.67 | 0.912115 |
Target: 5'- gCGuGCCGGUGCGCAcgcgcuuGccGCGAAc -3' miRNA: 3'- -GC-CGGCCGCGCGUuuuu---CuuCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 117937 | 0.67 | 0.899269 |
Target: 5'- aGGCCGGCGUGCGcGccGccGCGu-- -3' miRNA: 3'- gCCGGCCGCGCGUuUuuCuuCGCuua -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 44195 | 0.67 | 0.89247 |
Target: 5'- -cGUCGGCGCGUGAAAc--AGCGAGUu -3' miRNA: 3'- gcCGGCCGCGCGUUUUucuUCGCUUA- -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 117337 | 0.67 | 0.89247 |
Target: 5'- aCGGCgCGGCGCGgGcGAAccGGCGGGc -3' miRNA: 3'- -GCCG-GCCGCGCgUuUUUcuUCGCUUa -5' |
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6780 | 5' | -53.6 | NC_001875.2 | + | 118320 | 0.68 | 0.870619 |
Target: 5'- gCGGCCGGcCGCGCGcu--GcAGGUGAu- -3' miRNA: 3'- -GCCGGCC-GCGCGUuuuuC-UUCGCUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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