miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 59083 0.67 0.918156
Target:  5'- uGGCCGGCGCGgAAAcGGuuuccAGGCuGAc- -3'
miRNA:   3'- gCCGGCCGCGCgUUUuUC-----UUCG-CUua -5'
6780 5' -53.6 NC_001875.2 + 61437 0.67 0.918156
Target:  5'- uGGCCGGCuCGCAGccGGGAuCGAc- -3'
miRNA:   3'- gCCGGCCGcGCGUUuuUCUUcGCUua -5'
6780 5' -53.6 NC_001875.2 + 35792 0.67 0.912115
Target:  5'- gCGuGCCGGUGCGCAcgcgcuuGccGCGAAc -3'
miRNA:   3'- -GC-CGGCCGCGCGUuuuu---CuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 38455 0.67 0.912115
Target:  5'- aGuGCCGGCGCGCGcu-AGAauuggugcAGCGcGUg -3'
miRNA:   3'- gC-CGGCCGCGCGUuuuUCU--------UCGCuUA- -5'
6780 5' -53.6 NC_001875.2 + 32488 0.67 0.912115
Target:  5'- uGGCgGGCGCGCcc-AAGuugcGCGGAc -3'
miRNA:   3'- gCCGgCCGCGCGuuuUUCuu--CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 99923 0.67 0.905818
Target:  5'- gGGCCGcGCGCGCGGu--GcAGCGc-- -3'
miRNA:   3'- gCCGGC-CGCGCGUUuuuCuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 117937 0.67 0.899269
Target:  5'- aGGCCGGCGUGCGcGccGccGCGu-- -3'
miRNA:   3'- gCCGGCCGCGCGUuUuuCuuCGCuua -5'
6780 5' -53.6 NC_001875.2 + 79827 0.67 0.899269
Target:  5'- cCGGCaugguGGUGCcaGCAAGAAGggGCa--- -3'
miRNA:   3'- -GCCGg----CCGCG--CGUUUUUCuuCGcuua -5'
6780 5' -53.6 NC_001875.2 + 100146 0.67 0.89247
Target:  5'- cCGG-CGGCGCGCA---AGcGGCGGu- -3'
miRNA:   3'- -GCCgGCCGCGCGUuuuUCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 41352 0.67 0.89247
Target:  5'- gGGCC-GCGCGCAGuuuGAacgcgcgcugcAGCGAAa -3'
miRNA:   3'- gCCGGcCGCGCGUUuuuCU-----------UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 120062 0.67 0.89247
Target:  5'- uGGUCaGGCGCGCcgcGAGGuuGGCGAu- -3'
miRNA:   3'- gCCGG-CCGCGCGuuuUUCU--UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 119427 0.67 0.89247
Target:  5'- aCGGCCugcuuGGCGCGCGGcAAacAGCGGc- -3'
miRNA:   3'- -GCCGG-----CCGCGCGUUuUUcuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 44195 0.67 0.89247
Target:  5'- -cGUCGGCGCGUGAAAc--AGCGAGUu -3'
miRNA:   3'- gcCGGCCGCGCGUUUUucuUCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 117337 0.67 0.89247
Target:  5'- aCGGCgCGGCGCGgGcGAAccGGCGGGc -3'
miRNA:   3'- -GCCG-GCCGCGCgUuUUUcuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 95705 0.67 0.89247
Target:  5'- aCGGCUcgGGCGCGCuGAAAc--GCGAAg -3'
miRNA:   3'- -GCCGG--CCGCGCGuUUUUcuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 83003 0.68 0.885426
Target:  5'- -cGCCGGCGgGCuu---GAAGCGGc- -3'
miRNA:   3'- gcCGGCCGCgCGuuuuuCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 19949 0.68 0.885426
Target:  5'- gCGGCCGGCGCGaCGGuccGGccGGCGc-- -3'
miRNA:   3'- -GCCGGCCGCGC-GUUuuuCU--UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 67705 0.68 0.885426
Target:  5'- uGGCCGGCG-GCcuGAGGggGUu--- -3'
miRNA:   3'- gCCGGCCGCgCGuuUUUCuuCGcuua -5'
6780 5' -53.6 NC_001875.2 + 100843 0.68 0.880351
Target:  5'- uCGGCCGcGCGCGCGuaaucuugcuuuuuGAGcGCGAGg -3'
miRNA:   3'- -GCCGGC-CGCGCGUuuuu----------CUU-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 57578 0.68 0.878141
Target:  5'- cCGGCgCGGCGuCGCGcuGuccAGAAGCGu-- -3'
miRNA:   3'- -GCCG-GCCGC-GCGUuuU---UCUUCGCuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.