miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 5' -51.7 NC_001875.2 + 19990 0.68 0.947196
Target:  5'- cCGAcAACGUGCACgaGGAGUCGuuCGcCAa -3'
miRNA:   3'- -GCU-UUGCACGUG--UCUCAGCcuGCuGU- -5'
6781 5' -51.7 NC_001875.2 + 12435 0.69 0.942621
Target:  5'- cCGuuGCGUGCGCGccG-CGGugGACGc -3'
miRNA:   3'- -GCuuUGCACGUGUcuCaGCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 64907 0.69 0.932718
Target:  5'- -cAAGCGcGCGCAGAG-CGacGACGACAu -3'
miRNA:   3'- gcUUUGCaCGUGUCUCaGC--CUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 19348 0.69 0.927387
Target:  5'- gGcGugGUGCGCGGAgcGUUGGcCGACGu -3'
miRNA:   3'- gCuUugCACGUGUCU--CAGCCuGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 48962 0.69 0.921803
Target:  5'- uCGuuuGACaUGCacGCAGAGUCGGGCGcCGa -3'
miRNA:   3'- -GCu--UUGcACG--UGUCUCAGCCUGCuGU- -5'
6781 5' -51.7 NC_001875.2 + 67333 0.7 0.915965
Target:  5'- aCGAAAgcagcaGCGacgaGGAGUCGGGCGGCAa -3'
miRNA:   3'- -GCUUUgca---CGUg---UCUCAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 28654 0.7 0.896946
Target:  5'- uGGAACGUGUggaACGGcGgcgUGGGCGACAu -3'
miRNA:   3'- gCUUUGCACG---UGUCuCa--GCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 28947 0.7 0.890112
Target:  5'- uGggGCGUGUACGGccgcGGcuuucCGGugGACAa -3'
miRNA:   3'- gCuuUGCACGUGUC----UCa----GCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 101999 0.71 0.860421
Target:  5'- uGcgGCGUGCGCGGcGG-CGGugGACu -3'
miRNA:   3'- gCuuUGCACGUGUC-UCaGCCugCUGu -5'
6781 5' -51.7 NC_001875.2 + 86652 0.71 0.860421
Target:  5'- cCGAAucgaGCGUGguCAGGG-CGGcCGACAa -3'
miRNA:   3'- -GCUU----UGCACguGUCUCaGCCuGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 68010 0.71 0.852436
Target:  5'- -uGGACG-GCuACAGGuuGUCGGACGACGa -3'
miRNA:   3'- gcUUUGCaCG-UGUCU--CAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 131739 0.72 0.809488
Target:  5'- uGAAugGUGCAUuGGGccggcggcggaUCGGGCGGCGc -3'
miRNA:   3'- gCUUugCACGUGuCUC-----------AGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 69729 0.73 0.791054
Target:  5'- --uAACGUuuGCACGGAaUCGGGCGGCGa -3'
miRNA:   3'- gcuUUGCA--CGUGUCUcAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 21939 0.73 0.772012
Target:  5'- gCGggGCGUuaaacguucgcgGCGCGGGGaUGGGCGGCGc -3'
miRNA:   3'- -GCuuUGCA------------CGUGUCUCaGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 7099 0.74 0.712029
Target:  5'- ---uACGUGCGCGGc-UCGGACGGCGg -3'
miRNA:   3'- gcuuUGCACGUGUCucAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 127835 0.75 0.680928
Target:  5'- -cAGACGgGCGCGGcGUUGGACGACGa -3'
miRNA:   3'- gcUUUGCaCGUGUCuCAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 90441 0.75 0.649442
Target:  5'- aGAcGCGcGCGCAGAggcGUCGGugGGCGg -3'
miRNA:   3'- gCUuUGCaCGUGUCU---CAGCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 3137 0.76 0.628362
Target:  5'- gCGAAGCccgcUGCGCGGAcgcggcGUCGGGCGGCGa -3'
miRNA:   3'- -GCUUUGc---ACGUGUCU------CAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 81541 1.1 0.006363
Target:  5'- cCGAAACGUGCACAGAGUCGGACGACAg -3'
miRNA:   3'- -GCUUUGCACGUGUCUCAGCCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.