miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6782 5' -53.5 NC_001875.2 + 2274 0.69 0.879721
Target:  5'- gGGCCauguugaCGUCGuGAUgcgcgcgcgcCGUGGCCGCGc -3'
miRNA:   3'- -CCGG-------GCAGUuCUAaaa-------GCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 50933 0.69 0.874617
Target:  5'- cGCCCGUCAAGuugUUCGUGaaCgGCa -3'
miRNA:   3'- cCGGGCAGUUCuaaAAGCACc-GgCGc -5'
6782 5' -53.5 NC_001875.2 + 73725 0.69 0.874617
Target:  5'- gGGUUgGUCGGGAg----GUGGCUGCGg -3'
miRNA:   3'- -CCGGgCAGUUCUaaaagCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 50858 0.69 0.867135
Target:  5'- gGGCCCGUCGAcuugUUUGUGuucaacCCGCGa -3'
miRNA:   3'- -CCGGGCAGUUcuaaAAGCACc-----GGCGC- -5'
6782 5' -53.5 NC_001875.2 + 94771 0.69 0.851521
Target:  5'- cGUCCGcCAAacacagCGUGGCCGCGu -3'
miRNA:   3'- cCGGGCaGUUcuaaaaGCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 87851 0.71 0.799984
Target:  5'- cGCCCGUCGGGcugucCGUGGCgGuCGg -3'
miRNA:   3'- cCGGGCAGUUCuaaaaGCACCGgC-GC- -5'
6782 5' -53.5 NC_001875.2 + 130925 0.71 0.789866
Target:  5'- cGGCCCugcagucGUUAAGccggUUCGUGGCCGa- -3'
miRNA:   3'- -CCGGG-------CAGUUCuaa-AAGCACCGGCgc -5'
6782 5' -53.5 NC_001875.2 + 28901 0.71 0.777681
Target:  5'- aGCCCGgccgcccccacaaCAAGAc---CGUGGCCGCGu -3'
miRNA:   3'- cCGGGCa------------GUUCUaaaaGCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 102368 0.72 0.711728
Target:  5'- uGGCCCGUCcAG-UUUUUGgagccgagccgcaUGGCCGCc -3'
miRNA:   3'- -CCGGGCAGuUCuAAAAGC-------------ACCGGCGc -5'
6782 5' -53.5 NC_001875.2 + 33873 0.72 0.702564
Target:  5'- cGGCCgG-CAgaacGGcgUUUCgGUGGCCGCGu -3'
miRNA:   3'- -CCGGgCaGU----UCuaAAAG-CACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 35050 0.73 0.65094
Target:  5'- cGGCCCGUCGcaggAGGUgcccgugcuggUUUGcGGCCGCa -3'
miRNA:   3'- -CCGGGCAGU----UCUAa----------AAGCaCCGGCGc -5'
6782 5' -53.5 NC_001875.2 + 11809 0.74 0.640534
Target:  5'- cGGCCgCGUCGGug--UUUGUGGUCGCGc -3'
miRNA:   3'- -CCGG-GCAGUUcuaaAAGCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 130403 0.77 0.449807
Target:  5'- uGCCgCGgaaGAGAggUUUGUGGCCGCGg -3'
miRNA:   3'- cCGG-GCag-UUCUaaAAGCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 80953 1.1 0.003864
Target:  5'- gGGCCCGUCAAGAUUUUCGUGGCCGCGc -3'
miRNA:   3'- -CCGGGCAGUUCUAAAAGCACCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.