miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6783 3' -49.8 NC_001875.2 + 99602 0.66 0.996012
Target:  5'- gCGCCGGuauguCUgcGCGUUGGCGUu-- -3'
miRNA:   3'- -GCGGCUuuu--GAacUGCAACCGCAcau -5'
6783 3' -49.8 NC_001875.2 + 88271 0.66 0.995319
Target:  5'- uCGCCGccAGCaUGACGcUGGCGg--- -3'
miRNA:   3'- -GCGGCuuUUGaACUGCaACCGCacau -5'
6783 3' -49.8 NC_001875.2 + 92623 0.66 0.993641
Target:  5'- uGCCGGAAAacccGACGacgUGGCGguUGUAg -3'
miRNA:   3'- gCGGCUUUUgaa-CUGCa--ACCGC--ACAU- -5'
6783 3' -49.8 NC_001875.2 + 79953 0.66 0.993641
Target:  5'- aCGCCGuucAGGCacUGcACGUUGGCGUa-- -3'
miRNA:   3'- -GCGGCu--UUUGa-AC-UGCAACCGCAcau -5'
6783 3' -49.8 NC_001875.2 + 29281 0.68 0.981643
Target:  5'- gCGCCGGcgGGGCgcgGuCGUgUGGCGUGUc -3'
miRNA:   3'- -GCGGCU--UUUGaa-CuGCA-ACCGCACAu -5'
6783 3' -49.8 NC_001875.2 + 84400 0.69 0.971395
Target:  5'- aGCCG-GAGCUUcGGCGgcGGCGcGUAu -3'
miRNA:   3'- gCGGCuUUUGAA-CUGCaaCCGCaCAU- -5'
6783 3' -49.8 NC_001875.2 + 35331 0.69 0.971395
Target:  5'- aCGCCGAAAAgaUGcuaAUGUUGGCGg--- -3'
miRNA:   3'- -GCGGCUUUUgaAC---UGCAACCGCacau -5'
6783 3' -49.8 NC_001875.2 + 14933 0.69 0.968292
Target:  5'- gGUCGGu-GCggaUGGCGUUGGCGUcGUGc -3'
miRNA:   3'- gCGGCUuuUGa--ACUGCAACCGCA-CAU- -5'
6783 3' -49.8 NC_001875.2 + 2817 0.69 0.957565
Target:  5'- aGCgCGAGcGCggcGACGUUGGCGaGUAg -3'
miRNA:   3'- gCG-GCUUuUGaa-CUGCAACCGCaCAU- -5'
6783 3' -49.8 NC_001875.2 + 18823 0.7 0.939746
Target:  5'- aCGCUGGcGGAUUUGGUGUUGGCGcUGUGg -3'
miRNA:   3'- -GCGGCU-UUUGAACUGCAACCGC-ACAU- -5'
6783 3' -49.8 NC_001875.2 + 41596 0.72 0.89143
Target:  5'- aCGCCGAAGGCgcgGGCGcgGGCGcGg- -3'
miRNA:   3'- -GCGGCUUUUGaa-CUGCaaCCGCaCau -5'
6783 3' -49.8 NC_001875.2 + 13350 0.74 0.789911
Target:  5'- aCGCCGGAcACUUGGCGU--GCGUGc- -3'
miRNA:   3'- -GCGGCUUuUGAACUGCAacCGCACau -5'
6783 3' -49.8 NC_001875.2 + 95138 0.77 0.665914
Target:  5'- aCGCCGuu-GCUguUGACGUUGGCGUu-- -3'
miRNA:   3'- -GCGGCuuuUGA--ACUGCAACCGCAcau -5'
6783 3' -49.8 NC_001875.2 + 79514 1.08 0.011772
Target:  5'- gCGCCGAAAACUUGACGUUGGCGUGUAu -3'
miRNA:   3'- -GCGGCUUUUGAACUGCAACCGCACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.