Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6783 | 5' | -49.9 | NC_001875.2 | + | 39657 | 0.7 | 0.916978 |
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Target: 5'- gCGCGAguuuGGGCCGGCGGCGc-------- -3' miRNA: 3'- -GCGUU----UCCGGUCGCCGUaacaaaagu -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 124769 | 0.71 | 0.890296 |
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Target: 5'- gCGCAcAGGCCGGUGGCGUc------- -3' miRNA: 3'- -GCGUuUCCGGUCGCCGUAacaaaagu -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 39168 | 0.71 | 0.890296 |
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Target: 5'- cCGCGAggcGGGCCGGCGGUugcgUGgcgUUUAc -3' miRNA: 3'- -GCGUU---UCCGGUCGCCGua--ACaa-AAGU- -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 75702 | 0.71 | 0.890296 |
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Target: 5'- gGCGAGGGCaaaGGUGGCuUUG-UUUCGa -3' miRNA: 3'- gCGUUUCCGg--UCGCCGuAACaAAAGU- -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 38310 | 0.71 | 0.882969 |
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Target: 5'- aGCGccgacAAGGCCGGCGGCAUg------- -3' miRNA: 3'- gCGU-----UUCCGGUCGCCGUAacaaaagu -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 121449 | 0.72 | 0.875389 |
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Target: 5'- cCGCGccacGGCgCGGCGGCGUUcaaaGUUUUCGg -3' miRNA: 3'- -GCGUuu--CCG-GUCGCCGUAA----CAAAAGU- -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 98650 | 0.72 | 0.867562 |
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Target: 5'- gGCGAGGGCC-GCuGCAUUGUg--CAc -3' miRNA: 3'- gCGUUUCCGGuCGcCGUAACAaaaGU- -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 56449 | 0.74 | 0.742844 |
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Target: 5'- aCGguGAGGCCGGUGGCGggguccgcgcgcgUGUUggUCAg -3' miRNA: 3'- -GCguUUCCGGUCGCCGUa------------ACAAa-AGU- -5' |
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| 6783 | 5' | -49.9 | NC_001875.2 | + | 79550 | 1.1 | 0.007149 |
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Target: 5'- gCGCAAAGGCCAGCGGCAUUGUUUUCAa -3' miRNA: 3'- -GCGUUUCCGGUCGCCGUAACAAAAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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