miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6784 5' -55.1 NC_001875.2 + 50523 0.66 0.912242
Target:  5'- gGCaCGAuGACGAgGAGgaggcgccGCCGGcgGCGCg -3'
miRNA:   3'- -UG-GCUcUUGCUgCUCa-------CGGCCa-UGCG- -5'
6784 5' -55.1 NC_001875.2 + 103310 0.67 0.906172
Target:  5'- aAUCGAuGAcCGGCG--UGCCGGgcgACGCg -3'
miRNA:   3'- -UGGCU-CUuGCUGCucACGGCCa--UGCG- -5'
6784 5' -55.1 NC_001875.2 + 77315 0.67 0.905552
Target:  5'- cGCCGAGuacGCGGCG-GUGgCCGGccccaacUACcGCg -3'
miRNA:   3'- -UGGCUCu--UGCUGCuCAC-GGCC-------AUG-CG- -5'
6784 5' -55.1 NC_001875.2 + 92623 0.67 0.905552
Target:  5'- uGCCG-GAAaaccCGACGAcGUGgCGGUuguagcgGCGCa -3'
miRNA:   3'- -UGGCuCUU----GCUGCU-CACgGCCA-------UGCG- -5'
6784 5' -55.1 NC_001875.2 + 68987 0.67 0.899866
Target:  5'- -aCGAGuuUGugGAGUGCCGcGgGgGCa -3'
miRNA:   3'- ugGCUCuuGCugCUCACGGC-CaUgCG- -5'
6784 5' -55.1 NC_001875.2 + 113832 0.67 0.899866
Target:  5'- uCUGGGAACaGCGGGUcgggGUCGGgcCGCa -3'
miRNA:   3'- uGGCUCUUGcUGCUCA----CGGCCauGCG- -5'
6784 5' -55.1 NC_001875.2 + 47028 0.67 0.899866
Target:  5'- cACCGAGGGCG--GAGUGgUGG-GCGUg -3'
miRNA:   3'- -UGGCUCUUGCugCUCACgGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 42490 0.67 0.893328
Target:  5'- uACCGAcGAagccaACGACGAGUGCauuGUuuGCa -3'
miRNA:   3'- -UGGCU-CU-----UGCUGCUCACGgc-CAugCG- -5'
6784 5' -55.1 NC_001875.2 + 89466 0.67 0.893328
Target:  5'- -gCGAGAcuguCGACGuGUGCaUGG-ACGCg -3'
miRNA:   3'- ugGCUCUu---GCUGCuCACG-GCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 111868 0.67 0.886559
Target:  5'- cGCaCGucAGcAACGGCGAGgcgccgGCCGGaccgUGCGCg -3'
miRNA:   3'- -UG-GC--UC-UUGCUGCUCa-----CGGCC----AUGCG- -5'
6784 5' -55.1 NC_001875.2 + 84441 0.67 0.879566
Target:  5'- gAUCGGGAGCGGCG-GcGgCGGUagaccaugauGCGCg -3'
miRNA:   3'- -UGGCUCUUGCUGCuCaCgGCCA----------UGCG- -5'
6784 5' -55.1 NC_001875.2 + 74100 0.67 0.879566
Target:  5'- aGuuGGGcAGCGACGccGUGCUGGcGCGUg -3'
miRNA:   3'- -UggCUC-UUGCUGCu-CACGGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 99168 0.68 0.872351
Target:  5'- gACCGGGAG-GACgGAGaaaucacGCCGGUguauACGCg -3'
miRNA:   3'- -UGGCUCUUgCUG-CUCa------CGGCCA----UGCG- -5'
6784 5' -55.1 NC_001875.2 + 39327 0.68 0.872351
Target:  5'- cGCCGGGcGCGcACGAGcGCCcGUuuuGCGCc -3'
miRNA:   3'- -UGGCUCuUGC-UGCUCaCGGcCA---UGCG- -5'
6784 5' -55.1 NC_001875.2 + 89349 0.68 0.872351
Target:  5'- cGCaCGcGGACGACGGcGUGC-GcGUGCGCg -3'
miRNA:   3'- -UG-GCuCUUGCUGCU-CACGgC-CAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 46778 0.68 0.872351
Target:  5'- cACCGcGAugGACGAuuuuacGUGCCGcc-CGCa -3'
miRNA:   3'- -UGGCuCUugCUGCU------CACGGCcauGCG- -5'
6784 5' -55.1 NC_001875.2 + 115776 0.68 0.86492
Target:  5'- cGCCGuGugcguccacAGCGACGAGUGUuguagCGGUGCa- -3'
miRNA:   3'- -UGGCuC---------UUGCUGCUCACG-----GCCAUGcg -5'
6784 5' -55.1 NC_001875.2 + 69939 0.68 0.863409
Target:  5'- cGCCGuGAcACGGCGcGUGUCGGgccacggcgaaaACGCg -3'
miRNA:   3'- -UGGCuCU-UGCUGCuCACGGCCa-----------UGCG- -5'
6784 5' -55.1 NC_001875.2 + 68599 0.68 0.856504
Target:  5'- cGCCGAGccCGACGcguuuguGGUGaCGGgcgACGCg -3'
miRNA:   3'- -UGGCUCuuGCUGC-------UCACgGCCa--UGCG- -5'
6784 5' -55.1 NC_001875.2 + 29784 0.68 0.849434
Target:  5'- gGCCGcGGGugGACGGgcGUGUCaGGcUACGCc -3'
miRNA:   3'- -UGGC-UCUugCUGCU--CACGG-CC-AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.