miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 3' -54.5 NC_001875.2 + 42995 0.66 0.92279
Target:  5'- gCGgCCGUUGCgaAGGUGGccuccauUGCGAGUGCc -3'
miRNA:   3'- -GCgGGCAGCGg-UCCGUC-------AUGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 39217 0.66 0.91764
Target:  5'- cCGCCaCGUCGUCGGGUuuuccgGCAuucGCg -3'
miRNA:   3'- -GCGG-GCAGCGGUCCGuca---UGUuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 65124 0.66 0.91764
Target:  5'- aGCC--UCGCCGuGCAGUACAuGGUGUc -3'
miRNA:   3'- gCGGgcAGCGGUcCGUCAUGU-UUACG- -5'
6785 3' -54.5 NC_001875.2 + 23628 0.66 0.911683
Target:  5'- uGCCCGUgGUCuuGCuGaGCGGGUGCu -3'
miRNA:   3'- gCGGGCAgCGGucCGuCaUGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 13790 0.66 0.911683
Target:  5'- gCGCCCGaauaaauuugacUgGCCAcgcgauccauGGUGGUGCAAcAUGCa -3'
miRNA:   3'- -GCGGGC------------AgCGGU----------CCGUCAUGUU-UACG- -5'
6785 3' -54.5 NC_001875.2 + 83403 0.66 0.911683
Target:  5'- gGUUgGUCGCCAuGGCGccGCAAAacUGCg -3'
miRNA:   3'- gCGGgCAGCGGU-CCGUcaUGUUU--ACG- -5'
6785 3' -54.5 NC_001875.2 + 62756 0.66 0.911683
Target:  5'- gGCCCG-CGCCguugaacgcgcAGG-GGUGCGuuUGCa -3'
miRNA:   3'- gCGGGCaGCGG-----------UCCgUCAUGUuuACG- -5'
6785 3' -54.5 NC_001875.2 + 66107 0.67 0.905479
Target:  5'- gGCCCGcgCGgCGGGCGGcgaGGcgGCg -3'
miRNA:   3'- gCGGGCa-GCgGUCCGUCaugUUuaCG- -5'
6785 3' -54.5 NC_001875.2 + 37092 0.67 0.905479
Target:  5'- aCGacaCCGcCGCguGGguGUGCGGGcGCg -3'
miRNA:   3'- -GCg--GGCaGCGguCCguCAUGUUUaCG- -5'
6785 3' -54.5 NC_001875.2 + 122023 0.67 0.904845
Target:  5'- uCGCCCGUuuuuuauagcagcCGCCGauGGCGccGUGCAAGUa- -3'
miRNA:   3'- -GCGGGCA-------------GCGGU--CCGU--CAUGUUUAcg -5'
6785 3' -54.5 NC_001875.2 + 39665 0.67 0.904845
Target:  5'- gGCCCGUgGCUucgucgaaaacaaAGcccGCGGUGCAAuAUGCc -3'
miRNA:   3'- gCGGGCAgCGG-------------UC---CGUCAUGUU-UACG- -5'
6785 3' -54.5 NC_001875.2 + 54587 0.67 0.899032
Target:  5'- uCGCCCGgcggcgCGCCcacGGcGCGGUAUcgGUGg -3'
miRNA:   3'- -GCGGGCa-----GCGG---UC-CGUCAUGuuUACg -5'
6785 3' -54.5 NC_001875.2 + 22707 0.67 0.899032
Target:  5'- uCGCCCuagucGUCGCCAcuguGGCc-UACuuGUGCg -3'
miRNA:   3'- -GCGGG-----CAGCGGU----CCGucAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 86119 0.67 0.892344
Target:  5'- uCGCguggaCGUgGCCAucGGCAGUGCGcg-GCg -3'
miRNA:   3'- -GCGg----GCAgCGGU--CCGUCAUGUuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 62594 0.67 0.892344
Target:  5'- gGCCCGUgcCGUCGGGCAaGUcgGCAca-GCg -3'
miRNA:   3'- gCGGGCA--GCGGUCCGU-CA--UGUuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 94346 0.67 0.892344
Target:  5'- cCGCaCCGUCGCC-GGCcGaaaaaaacucuUGCAAcUGCa -3'
miRNA:   3'- -GCG-GGCAGCGGuCCGuC-----------AUGUUuACG- -5'
6785 3' -54.5 NC_001875.2 + 121401 0.67 0.891662
Target:  5'- gCGCCgCGUcaaagcugcugCGCCaaauguuGGGUAGUGCAGcggGUGCc -3'
miRNA:   3'- -GCGG-GCA-----------GCGG-------UCCGUCAUGUU---UACG- -5'
6785 3' -54.5 NC_001875.2 + 102817 0.67 0.888216
Target:  5'- aGCCCGUCGCCGccGCAaaucgggaugaagccGUACAgcaGAUGg -3'
miRNA:   3'- gCGGGCAGCGGUc-CGU---------------CAUGU---UUACg -5'
6785 3' -54.5 NC_001875.2 + 95983 0.67 0.885418
Target:  5'- uGUCCGagcgCGCCGuGCAGUACcc-UGCa -3'
miRNA:   3'- gCGGGCa---GCGGUcCGUCAUGuuuACG- -5'
6785 3' -54.5 NC_001875.2 + 38545 0.67 0.885418
Target:  5'- aGCUCGUgGCCGGGUuGcUGCGucgGCg -3'
miRNA:   3'- gCGGGCAgCGGUCCGuC-AUGUuuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.