miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 5' -50.5 NC_001875.2 + 79456 0.67 0.98744
Target:  5'- aGGUAGCUggcgUUugaGCUGGCCacgaGGCAAa- -3'
miRNA:   3'- gCCGUUGAa---AA---UGACCGGg---CUGUUgc -5'
6785 5' -50.5 NC_001875.2 + 29198 0.67 0.98744
Target:  5'- aGGCAACUU----UGGCCaguuGAUGGCGg -3'
miRNA:   3'- gCCGUUGAAaaugACCGGg---CUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 73682 0.67 0.98744
Target:  5'- gCGGCGGCUgcUGCggcGGCUgcugCGGCGGCu -3'
miRNA:   3'- -GCCGUUGAaaAUGa--CCGG----GCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 79810 0.67 0.985759
Target:  5'- gGGCcGCUUgaAC-GuGCCCGGCAugGu -3'
miRNA:   3'- gCCGuUGAAaaUGaC-CGGGCUGUugC- -5'
6785 5' -50.5 NC_001875.2 + 113611 0.67 0.985759
Target:  5'- uCGGCGGCg------GGCCgCGGCGGCa -3'
miRNA:   3'- -GCCGUUGaaaaugaCCGG-GCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 47034 0.67 0.985759
Target:  5'- gGGCGGaguggUggGC-GuGCCCGACAACGg -3'
miRNA:   3'- gCCGUUga---AaaUGaC-CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 110645 0.67 0.985759
Target:  5'- uGGUGGC----GCUGGCCgugccgcgCGACGACGa -3'
miRNA:   3'- gCCGUUGaaaaUGACCGG--------GCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 25996 0.67 0.983913
Target:  5'- aCGGCGGCUc--GCUGGaCCCcaACAGCc -3'
miRNA:   3'- -GCCGUUGAaaaUGACC-GGGc-UGUUGc -5'
6785 5' -50.5 NC_001875.2 + 118666 0.67 0.983913
Target:  5'- uCGGCAACUaccuggACUGcaacuuucgcguGCUCGACGAUGc -3'
miRNA:   3'- -GCCGUUGAaaa---UGAC------------CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 10446 0.67 0.983913
Target:  5'- -aGCAGCUUUgACgcGGCgCGGCGGCGc -3'
miRNA:   3'- gcCGUUGAAAaUGa-CCGgGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 81721 0.67 0.983913
Target:  5'- cCGaGCGACUguuuaUUAUUGcGCCCGAaAACGu -3'
miRNA:   3'- -GC-CGUUGAa----AAUGAC-CGGGCUgUUGC- -5'
6785 5' -50.5 NC_001875.2 + 64554 0.67 0.979682
Target:  5'- aCGGCuugg--UGCUGGC-CGGCGACu -3'
miRNA:   3'- -GCCGuugaaaAUGACCGgGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 22807 0.67 0.979682
Target:  5'- cCGGUAuCUggccgUGC-GGUCCGACGGCa -3'
miRNA:   3'- -GCCGUuGAaa---AUGaCCGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 102687 0.67 0.979682
Target:  5'- aGGCcggauuCUUUUacACUGGCCagGGCGACa -3'
miRNA:   3'- gCCGuu----GAAAA--UGACCGGg-CUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 75271 0.68 0.977279
Target:  5'- gCGGCGGCgucgGCgaUGGCgUCGGCGAUGg -3'
miRNA:   3'- -GCCGUUGaaaaUG--ACCG-GGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 11961 0.68 0.974674
Target:  5'- cCGGCGGCgcgUUGCaaaGCaCUGGCGACGg -3'
miRNA:   3'- -GCCGUUGaa-AAUGac-CG-GGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 50848 0.68 0.974674
Target:  5'- cCGGCGAUUgg----GGCCCGuCGACu -3'
miRNA:   3'- -GCCGUUGAaaaugaCCGGGCuGUUGc -5'
6785 5' -50.5 NC_001875.2 + 31716 0.68 0.974674
Target:  5'- cCGGCGcauuACUUUcgGCgaaguUGGCCCG-CGGCGu -3'
miRNA:   3'- -GCCGU----UGAAAa-UG-----ACCGGGCuGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 62191 0.68 0.974674
Target:  5'- uCGGCggUgagcggGCUGaGgCCGACGGCGu -3'
miRNA:   3'- -GCCGuuGaaaa--UGAC-CgGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 122025 0.68 0.968824
Target:  5'- gGGUAGC----ACUGGUCCGGCccAACGu -3'
miRNA:   3'- gCCGUUGaaaaUGACCGGGCUG--UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.