miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6786 5' -55.3 NC_001875.2 + 77380 0.66 0.893398
Target:  5'- uGCCGcacACGCUgUGcGGCGCCG-CGGCu- -3'
miRNA:   3'- -CGGUa--UGCGA-AC-CCGCGGUaGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 33486 0.66 0.893398
Target:  5'- cGCCGcGCGCUggGGuGCGCCAacCGAUu- -3'
miRNA:   3'- -CGGUaUGCGAa-CC-CGCGGUa-GCUGcu -5'
6786 5' -55.3 NC_001875.2 + 55038 0.66 0.893398
Target:  5'- uGUCGUACGCUUGGuGCuGCauguacuuuUCGAgGAu -3'
miRNA:   3'- -CGGUAUGCGAACC-CG-CGgu-------AGCUgCU- -5'
6786 5' -55.3 NC_001875.2 + 57532 0.66 0.893398
Target:  5'- uGUCcgGCGCcUGcGCGCCGUaGGCGAu -3'
miRNA:   3'- -CGGuaUGCGaACcCGCGGUAgCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 9078 0.67 0.886573
Target:  5'- cGCCAacUGCGCcUGuGGCGa-GUCGGCGc -3'
miRNA:   3'- -CGGU--AUGCGaAC-CCGCggUAGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 54969 0.67 0.87952
Target:  5'- uGCCGgacgcguCGCUcgcgcUGGGCGCCuuucguuUCGugGc -3'
miRNA:   3'- -CGGUau-----GCGA-----ACCCGCGGu------AGCugCu -5'
6786 5' -55.3 NC_001875.2 + 40172 0.67 0.87952
Target:  5'- cGCgAUGCGCaUGGGCguGCCGUaCGcguACGGc -3'
miRNA:   3'- -CGgUAUGCGaACCCG--CGGUA-GC---UGCU- -5'
6786 5' -55.3 NC_001875.2 + 34153 0.67 0.87952
Target:  5'- cGCC-UGCGCgaauggUGGcGCuuuguucguuGCCGUCGGCGu -3'
miRNA:   3'- -CGGuAUGCGa-----ACC-CG----------CGGUAGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 5539 0.67 0.872241
Target:  5'- cGCCGUugagGCGCgcguuaaGGUGCCAgucaCGGCGAc -3'
miRNA:   3'- -CGGUA----UGCGaac----CCGCGGUa---GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 85216 0.67 0.872241
Target:  5'- gGCCGccGCGCgguaGCGCCGcaugUCGACGAg -3'
miRNA:   3'- -CGGUa-UGCGaaccCGCGGU----AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 32788 0.67 0.872241
Target:  5'- cGgCGUGgGC--GGGCGCCGcgccggcaagcUCGGCGAa -3'
miRNA:   3'- -CgGUAUgCGaaCCCGCGGU-----------AGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 6201 0.67 0.872241
Target:  5'- cGCCGUuucaaaGCGCgcaauuGCGuCCGUCGGCGAc -3'
miRNA:   3'- -CGGUA------UGCGaacc--CGC-GGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 113253 0.67 0.864743
Target:  5'- cGCCugaACGCgcaauaGGCGCCAaCGACGc -3'
miRNA:   3'- -CGGua-UGCGaac---CCGCGGUaGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 89278 0.67 0.857031
Target:  5'- cGCCGaccugGCGCggcUGGGCGCgacCAcCGugGAg -3'
miRNA:   3'- -CGGUa----UGCGa--ACCCGCG---GUaGCugCU- -5'
6786 5' -55.3 NC_001875.2 + 31941 0.67 0.857031
Target:  5'- cGCUcguUGCGCUcGaGGCuGCCggCGACGAc -3'
miRNA:   3'- -CGGu--AUGCGAaC-CCG-CGGuaGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 65825 0.67 0.849111
Target:  5'- uCCAcGCGCUcgUGGGCGCCcaacCGAUa- -3'
miRNA:   3'- cGGUaUGCGA--ACCCGCGGua--GCUGcu -5'
6786 5' -55.3 NC_001875.2 + 97035 0.67 0.849111
Target:  5'- cGUCGUaaACGCUUGccGGCGCaCAUuaacgagugCGACGAa -3'
miRNA:   3'- -CGGUA--UGCGAAC--CCGCG-GUA---------GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 40856 0.67 0.849111
Target:  5'- cGCCAagACGCgcaccgcGGGCGCCAUCc---- -3'
miRNA:   3'- -CGGUa-UGCGaa-----CCCGCGGUAGcugcu -5'
6786 5' -55.3 NC_001875.2 + 14402 0.68 0.84099
Target:  5'- gGUCGgggggaGCGUaUGGGCGCCAcCGGCa- -3'
miRNA:   3'- -CGGUa-----UGCGaACCCGCGGUaGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 41439 0.68 0.84099
Target:  5'- gGCCGcUGCGCgcgcacaGGCGCCGguugCGGCGc -3'
miRNA:   3'- -CGGU-AUGCGaac----CCGCGGUa---GCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.