miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 3' -57.8 NC_001875.2 + 68694 0.67 0.768618
Target:  5'- gCGUGCCCGUGGaccCGUGCgcCGGCc -3'
miRNA:   3'- -GCGCGGGCACUaccGCACGauGCUGu -5'
6787 3' -57.8 NC_001875.2 + 16210 0.67 0.768618
Target:  5'- uGCgGCCCGUGuuugagucgGGCGagugUGaCUGCGGCGa -3'
miRNA:   3'- gCG-CGGGCACua-------CCGC----AC-GAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 12674 0.67 0.768618
Target:  5'- gCGCGCCgCGU--UGGCcggGUGUgGCGGCAa -3'
miRNA:   3'- -GCGCGG-GCAcuACCG---CACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 58265 0.67 0.768618
Target:  5'- gGCGCUCGUGucacccggGGUGUcGUcGCGACGg -3'
miRNA:   3'- gCGCGGGCACua------CCGCA-CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 68999 0.67 0.76768
Target:  5'- aGUGCCgcgggggcaagcaCGUGGUGGCGcGCUGCcccGACc -3'
miRNA:   3'- gCGCGG-------------GCACUACCGCaCGAUG---CUGu -5'
6787 3' -57.8 NC_001875.2 + 68610 0.67 0.759186
Target:  5'- aCGCGUuuGUGGUgacgGGCGacGCggGCGACGu -3'
miRNA:   3'- -GCGCGggCACUA----CCGCa-CGa-UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 103924 0.67 0.759186
Target:  5'- uGCGaCCGUGuaaacGCGgGCUGCGACGg -3'
miRNA:   3'- gCGCgGGCACuac--CGCaCGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75336 0.67 0.749642
Target:  5'- gGUGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 43412 0.67 0.739997
Target:  5'- uGCGCUCGUuaacGccGGCGUaCUugGACAg -3'
miRNA:   3'- gCGCGGGCA----CuaCCGCAcGAugCUGU- -5'
6787 3' -57.8 NC_001875.2 + 10469 0.67 0.739997
Target:  5'- gCGCGCUCaGUGaAUGGCGcuUGCUgaACGAg- -3'
miRNA:   3'- -GCGCGGG-CAC-UACCGC--ACGA--UGCUgu -5'
6787 3' -57.8 NC_001875.2 + 75258 0.67 0.739997
Target:  5'- gGCGUCgGcGAUGGCGgcgGCgucgGCGAUg -3'
miRNA:   3'- gCGCGGgCaCUACCGCa--CGa---UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 98926 0.68 0.720436
Target:  5'- gGCGCCgGU--UGcGCGUGC-GCGACGc -3'
miRNA:   3'- gCGCGGgCAcuAC-CGCACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 111090 0.68 0.714505
Target:  5'- gGCGCC-GUGAaaaccuuuuguugcGGCGUGC-ACGGCAg -3'
miRNA:   3'- gCGCGGgCACUa-------------CCGCACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 83808 0.68 0.710538
Target:  5'- uCGUGCCUGUGGgcGGCG-GCcACGugGc -3'
miRNA:   3'- -GCGCGGGCACUa-CCGCaCGaUGCugU- -5'
6787 3' -57.8 NC_001875.2 + 73606 0.68 0.710538
Target:  5'- aGCGCCaacUGuugcGGCGgcgGCUGCGGCGg -3'
miRNA:   3'- gCGCGGgc-ACua--CCGCa--CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 23015 0.68 0.710538
Target:  5'- gCGCGCaCCGUGuucaGCGUGUUG-GACAg -3'
miRNA:   3'- -GCGCG-GGCACuac-CGCACGAUgCUGU- -5'
6787 3' -57.8 NC_001875.2 + 35065 0.68 0.690554
Target:  5'- gGUGCCCGUGcUGGUuUGCggccgcaucgACGGCGu -3'
miRNA:   3'- gCGCGGGCACuACCGcACGa---------UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 123360 0.68 0.690554
Target:  5'- gGCGCCCGgcGUGGUGUuuccGC-GCGACGu -3'
miRNA:   3'- gCGCGGGCacUACCGCA----CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 87369 0.68 0.690554
Target:  5'- uCGCGCCgGUGcacgacuUGGCGcacUGCgccgACGGCGc -3'
miRNA:   3'- -GCGCGGgCACu------ACCGC---ACGa---UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75528 0.68 0.680485
Target:  5'- gGCGUUgGUGAUGGCGUuggugauaGCgucgGCGAUg -3'
miRNA:   3'- gCGCGGgCACUACCGCA--------CGa---UGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.