miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 5' -54.8 NC_001875.2 + 61499 0.66 0.897943
Target:  5'- uGCGCGcCGGCUCgGcgccgcAGUCCGcGUGCu -3'
miRNA:   3'- cCGUGUuGUCGAGgU------UCGGGCuCACG- -5'
6787 5' -54.8 NC_001875.2 + 31790 0.66 0.895948
Target:  5'- aGCACcguCAGCUCCAcaaacagcaaaaccAGCgCGcaacAGUGCa -3'
miRNA:   3'- cCGUGuu-GUCGAGGU--------------UCGgGC----UCACG- -5'
6787 5' -54.8 NC_001875.2 + 7254 0.67 0.89121
Target:  5'- cGCGCuGCAGCggCCuGGCgCGGGUcGCc -3'
miRNA:   3'- cCGUGuUGUCGa-GGuUCGgGCUCA-CG- -5'
6787 5' -54.8 NC_001875.2 + 78370 0.67 0.89121
Target:  5'- cGCGCAGgAGUgaucgCCAAGCcgagcgacCCGcAGUGCu -3'
miRNA:   3'- cCGUGUUgUCGa----GGUUCG--------GGC-UCACG- -5'
6787 5' -54.8 NC_001875.2 + 117924 0.67 0.89121
Target:  5'- --gACGGCAaGCUgCAGGCCgGcGUGCg -3'
miRNA:   3'- ccgUGUUGU-CGAgGUUCGGgCuCACG- -5'
6787 5' -54.8 NC_001875.2 + 94195 0.67 0.89121
Target:  5'- aGGCGCAugacggACAGCgucuugCCGAGCCCcauGUcgucgGCg -3'
miRNA:   3'- -CCGUGU------UGUCGa-----GGUUCGGGcu-CA-----CG- -5'
6787 5' -54.8 NC_001875.2 + 10456 0.67 0.890524
Target:  5'- gGGCACGcaGGUggccgagUCCAacucaaacucguGGCCCGGGUcGCa -3'
miRNA:   3'- -CCGUGUugUCG-------AGGU------------UCGGGCUCA-CG- -5'
6787 5' -54.8 NC_001875.2 + 62096 0.67 0.88424
Target:  5'- uGGUucGCAGCAGgUCgccGCCCGAuuccGUGCa -3'
miRNA:   3'- -CCG--UGUUGUCgAGguuCGGGCU----CACG- -5'
6787 5' -54.8 NC_001875.2 + 120846 0.67 0.879223
Target:  5'- gGGCACGcgcgccuGCAGCgcuucgucgcuugacUgCAGGCCCGcuUGCg -3'
miRNA:   3'- -CCGUGU-------UGUCG---------------AgGUUCGGGCucACG- -5'
6787 5' -54.8 NC_001875.2 + 82855 0.67 0.877038
Target:  5'- gGGCGacuugGGCAGUUCgGcGCCCGAcucugcGUGCa -3'
miRNA:   3'- -CCGUg----UUGUCGAGgUuCGGGCU------CACG- -5'
6787 5' -54.8 NC_001875.2 + 19954 0.67 0.877038
Target:  5'- cGGCGCGACGGUccggCCGGcGCCUcgccguugcuGAcGUGCg -3'
miRNA:   3'- -CCGUGUUGUCGa---GGUU-CGGG----------CU-CACG- -5'
6787 5' -54.8 NC_001875.2 + 59480 0.67 0.877038
Target:  5'- uGCGCAgcGCGGCcgagaCAAGCgcgUCGAGUGCc -3'
miRNA:   3'- cCGUGU--UGUCGag---GUUCG---GGCUCACG- -5'
6787 5' -54.8 NC_001875.2 + 98910 0.67 0.877038
Target:  5'- uGGCGCcgUAGCUCgcGGCgCCGGuUGCg -3'
miRNA:   3'- -CCGUGuuGUCGAGguUCG-GGCUcACG- -5'
6787 5' -54.8 NC_001875.2 + 42296 0.67 0.877038
Target:  5'- gGGCACccGCGGCgCCAAGUacagaUCGAGcGCg -3'
miRNA:   3'- -CCGUGu-UGUCGaGGUUCG-----GGCUCaCG- -5'
6787 5' -54.8 NC_001875.2 + 15375 0.67 0.872607
Target:  5'- cGGU-CAGCAGCUCCAGcgagcuuaugaaagcGCUCGAcaGCg -3'
miRNA:   3'- -CCGuGUUGUCGAGGUU---------------CGGGCUcaCG- -5'
6787 5' -54.8 NC_001875.2 + 79008 0.67 0.869608
Target:  5'- aGCugGACAGCgu---GUCCGAGUcGCg -3'
miRNA:   3'- cCGugUUGUCGagguuCGGGCUCA-CG- -5'
6787 5' -54.8 NC_001875.2 + 88082 0.67 0.868853
Target:  5'- cGCACAACuGCgUCGuguuGCCCGAcaacaugGUGCa -3'
miRNA:   3'- cCGUGUUGuCGaGGUu---CGGGCU-------CACG- -5'
6787 5' -54.8 NC_001875.2 + 129166 0.67 0.861957
Target:  5'- aGGCGCcGCAGUUgccCCAGGCgCCGccgGCg -3'
miRNA:   3'- -CCGUGuUGUCGA---GGUUCG-GGCucaCG- -5'
6787 5' -54.8 NC_001875.2 + 99911 0.67 0.861957
Target:  5'- aGCGCAACgAGCgggCCGcGCgCGcGGUGCa -3'
miRNA:   3'- cCGUGUUG-UCGa--GGUuCGgGC-UCACG- -5'
6787 5' -54.8 NC_001875.2 + 94877 0.67 0.861957
Target:  5'- aGGCGCGuuugaaACuGCUCUuuGUCCGAGaugGCc -3'
miRNA:   3'- -CCGUGU------UGuCGAGGuuCGGGCUCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.