Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6788 | 3' | -63.3 | NC_001875.2 | + | 112833 | 0.67 | 0.447543 |
Target: 5'- uAGCGaCUGGaaCGUGGCGUCGucGUCCGu -3' miRNA: 3'- -UCGC-GGCC--GUACCGCAGCccCAGGUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75671 | 0.72 | 0.220825 |
Target: 5'- cGGCGUCGGCgAUGGCGUUGGcGUCg-- -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGguu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 114013 | 0.72 | 0.237102 |
Target: 5'- cGGCGCCcucgcGCAUGGCGgccgCGcGGUCCAGa -3' miRNA: 3'- -UCGCGGc----CGUACCGCa---GCcCCAGGUU- -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 50343 | 0.7 | 0.312373 |
Target: 5'- uGGUGUCGGCGucguUGGCGUCGGG--CCGc -3' miRNA: 3'- -UCGCGGCCGU----ACCGCAGCCCcaGGUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 95368 | 0.69 | 0.356324 |
Target: 5'- cGCGUCGGCGgaaaacGGCGUCGu-GUCCAAu -3' miRNA: 3'- uCGCGGCCGUa-----CCGCAGCccCAGGUU- -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 60495 | 0.68 | 0.379874 |
Target: 5'- uAGCGUCGGCGU--UGUCGGcGGUCaCAAa -3' miRNA: 3'- -UCGCGGCCGUAccGCAGCC-CCAG-GUU- -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75257 | 0.68 | 0.421371 |
Target: 5'- cGGCGUCGGCgAUGGCGgCGGcGUCg-- -3' miRNA: 3'- -UCGCGGCCG-UACCGCaGCCcCAGguu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 36418 | 0.67 | 0.429993 |
Target: 5'- cGCugGCCGGCGccgcGGUGUCGGGcuggugcuuaaaGUCCAGg -3' miRNA: 3'- uCG--CGGCCGUa---CCGCAGCCC------------CAGGUU- -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 63446 | 0.67 | 0.429993 |
Target: 5'- cGGCGUCGGCGgccagccgcgaGGCGUUGGuuUCCAGc -3' miRNA: 3'- -UCGCGGCCGUa----------CCGCAGCCccAGGUU- -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75593 | 0.73 | 0.200614 |
Target: 5'- cGGCGUCGGCgAUGGCGUCGGcGUUg-- -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGguu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75551 | 0.73 | 0.200614 |
Target: 5'- uAGCGUCGGCgAUGGCGUCGGcGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75509 | 0.73 | 0.200614 |
Target: 5'- uGGCGUCGGCgAUGGCGUCGGcGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75629 | 0.75 | 0.149393 |
Target: 5'- uGGCGUCGGCGuUGGCGUCGGcGUCg-- -3' miRNA: 3'- -UCGCGGCCGU-ACCGCAGCCcCAGguu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 117360 | 0.73 | 0.18653 |
Target: 5'- cGgGCCGGC-UGGcCGUCGGGGaggcgCCGAg -3' miRNA: 3'- uCgCGGCCGuACC-GCAGCCCCa----GGUU- -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75287 | 0.73 | 0.200614 |
Target: 5'- uGGCGUCGGCgAUGGCGUCGGcGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75317 | 0.73 | 0.200614 |
Target: 5'- uGGCGUCGGCgAUGGCGUCGGuGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75347 | 0.73 | 0.200614 |
Target: 5'- uGGCGUCGGCgAUGGCGUCGGcGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75389 | 0.73 | 0.200614 |
Target: 5'- uGGCGUCGGCgAUGGCGUCGGcGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75437 | 0.73 | 0.200614 |
Target: 5'- uGGCGUCGGCgAUGGCGUCGGcGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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6788 | 3' | -63.3 | NC_001875.2 | + | 75467 | 0.73 | 0.200614 |
Target: 5'- uGGCGUCGGCgAUGGCGUCGGcGUUgGu -3' miRNA: 3'- -UCGCGGCCG-UACCGCAGCCcCAGgUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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