miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6788	5'	-54.4	NC_001875.2	+	286	0.7	0.769671
	Target:  5'- cGUUGAACUCCacguugacggacacGGGCGCGcuuugCGCCGCUu -3' miRNA:   3'- cCAACUUGGGG--------------CCUGCGUa----GUGGUGA- -5'
6788	5'	-54.4	NC_001875.2	+	100896	0.7	0.762968
	Target:  5'- cGGUccGGGCgCCGcagcgcgcggaGACGCGUCGCCGCg -3' miRNA:   3'- -CCAa-CUUGgGGC-----------CUGCGUAGUGGUGa -5'
6788	5'	-54.4	NC_001875.2	+	27680	0.71	0.733618
	Target:  5'- aGUUGAcaAUgUCGGACGCGucuaUCGCCACg -3' miRNA:   3'- cCAACU--UGgGGCCUGCGU----AGUGGUGa -5'
6788	5'	-54.4	NC_001875.2	+	94315	0.72	0.672735
	Target:  5'- aGGUUGGGCgcguCCaggcaGGGCGCGUCGuCCGCa -3' miRNA:   3'- -CCAACUUG----GGg----CCUGCGUAGU-GGUGa -5'
6788	5'	-54.4	NC_001875.2	+	98354	0.73	0.620971
	Target:  5'- cGGUUGGcgcACCCCaGcGCGCGgcgCGCCACUu -3' miRNA:   3'- -CCAACU---UGGGGcC-UGCGUa--GUGGUGA- -5'
6788	5'	-54.4	NC_001875.2	+	36672	0.75	0.518973
	Target:  5'- --cUGAGCUCgGGGCGCGUCACCu-- -3' miRNA:   3'- ccaACUUGGGgCCUGCGUAGUGGuga -5'
6788	5'	-54.4	NC_001875.2	+	73932	1.11	0.002912
	Target:  5'- aGGUUGAACCCCGGACGCAUCACCACUa -3' miRNA:   3'- -CCAACUUGGGGCCUGCGUAGUGGUGA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home