miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6789 3' -54.8 NC_001875.2 + 105460 0.66 0.92707
Target:  5'- aCGAgUUGuuuGCGCacUGUUUUGCGgCCGCGu -3'
miRNA:   3'- -GUUgAGC---CGCG--ACAAAACGC-GGCGCu -5'
6789 3' -54.8 NC_001875.2 + 73655 0.66 0.92707
Target:  5'- gCGGCUgCGGCgGCUGcggcUGCuGCUGCGGc -3'
miRNA:   3'- -GUUGA-GCCG-CGACaaa-ACG-CGGCGCU- -5'
6789 3' -54.8 NC_001875.2 + 70212 0.66 0.92707
Target:  5'- -cACUgGGCGCccgag-GCGCCGCcGAc -3'
miRNA:   3'- guUGAgCCGCGacaaaaCGCGGCG-CU- -5'
6789 3' -54.8 NC_001875.2 + 18430 0.66 0.926527
Target:  5'- -uACUCGGCGCgag---GCGCgguccgcguggcgCGCGAa -3'
miRNA:   3'- guUGAGCCGCGacaaaaCGCG-------------GCGCU- -5'
6789 3' -54.8 NC_001875.2 + 99408 0.66 0.921521
Target:  5'- gCGGgUCGcgcaGCGCauUGUUggccaGCGCCGCGAu -3'
miRNA:   3'- -GUUgAGC----CGCG--ACAAaa---CGCGGCGCU- -5'
6789 3' -54.8 NC_001875.2 + 96981 0.66 0.921521
Target:  5'- gGACgUCGuGCGCaag-UUGCGuuGCGAc -3'
miRNA:   3'- gUUG-AGC-CGCGacaaAACGCggCGCU- -5'
6789 3' -54.8 NC_001875.2 + 54939 0.66 0.921521
Target:  5'- -cGCUgGGCGCcGccccUUUGCGCgCGCGu -3'
miRNA:   3'- guUGAgCCGCGaCa---AAACGCG-GCGCu -5'
6789 3' -54.8 NC_001875.2 + 42652 0.66 0.921521
Target:  5'- cCAGC-CGGUccgcgucgagGCUGaUUUGCGCCaGCGu -3'
miRNA:   3'- -GUUGaGCCG----------CGACaAAACGCGG-CGCu -5'
6789 3' -54.8 NC_001875.2 + 4047 0.66 0.921521
Target:  5'- aCAGCUUuaGGaucuuuugcuCGCUGUUUUGCGaCGCGc -3'
miRNA:   3'- -GUUGAG--CC----------GCGACAAAACGCgGCGCu -5'
6789 3' -54.8 NC_001875.2 + 111308 0.66 0.915722
Target:  5'- uCAAC-CGGUuugcacgcgucGCUGUUUUGCGCgcaCGCa- -3'
miRNA:   3'- -GUUGaGCCG-----------CGACAAAACGCG---GCGcu -5'
6789 3' -54.8 NC_001875.2 + 77380 0.66 0.915722
Target:  5'- -uGC-CGcacaCGCUGUgcgGCGCCGCGGc -3'
miRNA:   3'- guUGaGCc---GCGACAaaaCGCGGCGCU- -5'
6789 3' -54.8 NC_001875.2 + 50344 0.66 0.915722
Target:  5'- gGugUCGGCGUcGUUggcgucGgGCCGCGc -3'
miRNA:   3'- gUugAGCCGCGaCAAaa----CgCGGCGCu -5'
6789 3' -54.8 NC_001875.2 + 98270 0.66 0.909675
Target:  5'- cCGACUCGG-GCaUGg--UGCcCCGCGGc -3'
miRNA:   3'- -GUUGAGCCgCG-ACaaaACGcGGCGCU- -5'
6789 3' -54.8 NC_001875.2 + 32784 0.66 0.909675
Target:  5'- -cGCgCGGCGUgggcggGCGCCGCGc -3'
miRNA:   3'- guUGaGCCGCGacaaaaCGCGGCGCu -5'
6789 3' -54.8 NC_001875.2 + 77657 0.66 0.909675
Target:  5'- gAACcCGG-GCgacgcGUUUUGCGCCaGCGGg -3'
miRNA:   3'- gUUGaGCCgCGa----CAAAACGCGG-CGCU- -5'
6789 3' -54.8 NC_001875.2 + 86914 0.66 0.909675
Target:  5'- aAACgaGGCGCUGaa--GCGCCGCc- -3'
miRNA:   3'- gUUGagCCGCGACaaaaCGCGGCGcu -5'
6789 3' -54.8 NC_001875.2 + 43098 0.66 0.907813
Target:  5'- gAACUCGcCGCaGUUUUGCggcagguuggagccGCCGCGc -3'
miRNA:   3'- gUUGAGCcGCGaCAAAACG--------------CGGCGCu -5'
6789 3' -54.8 NC_001875.2 + 37795 0.66 0.903382
Target:  5'- aCAGCa-GGUGUgucgUUUGuCGCCGCGAa -3'
miRNA:   3'- -GUUGagCCGCGaca-AAAC-GCGGCGCU- -5'
6789 3' -54.8 NC_001875.2 + 91140 0.66 0.903382
Target:  5'- uGACgCGcGCGCggcgGUUccaaaUGCGCCGCGu -3'
miRNA:   3'- gUUGaGC-CGCGa---CAAa----ACGCGGCGCu -5'
6789 3' -54.8 NC_001875.2 + 102957 0.66 0.903382
Target:  5'- --cCUCGGCGCcgaaaagaccgUGUgcUUUGUGCCcuGCGGg -3'
miRNA:   3'- guuGAGCCGCG-----------ACA--AAACGCGG--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.