miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6789 5' -56.4 NC_001875.2 + 43420 0.66 0.838948
Target:  5'- aUuuGCGCGUGCGUGCcG-UCCUCGg -3'
miRNA:   3'- gAggUGCGCGCGUAUGuCgAGGAGUu -5'
6789 5' -56.4 NC_001875.2 + 111049 0.66 0.821805
Target:  5'- -cCCGCGCacuGCGCGUcgACGGCUUCUa-- -3'
miRNA:   3'- gaGGUGCG---CGCGUA--UGUCGAGGAguu -5'
6789 5' -56.4 NC_001875.2 + 54424 0.66 0.821805
Target:  5'- -aCCaACGCGCGCGUuGCccuGCUUUUCAAu -3'
miRNA:   3'- gaGG-UGCGCGCGUA-UGu--CGAGGAGUU- -5'
6789 5' -56.4 NC_001875.2 + 49932 0.66 0.812958
Target:  5'- -gCCGCGCGCGCuaauCAGCuggUCgUCGGa -3'
miRNA:   3'- gaGGUGCGCGCGuau-GUCG---AGgAGUU- -5'
6789 5' -56.4 NC_001875.2 + 65210 0.67 0.80394
Target:  5'- gCUCCAgcaUGCGCuuGcACAGCUCCUUGGg -3'
miRNA:   3'- -GAGGU---GCGCGcgUaUGUCGAGGAGUU- -5'
6789 5' -56.4 NC_001875.2 + 96450 0.67 0.80394
Target:  5'- -cUCGCGCGCGCcacggACAGCagcgCCUCc- -3'
miRNA:   3'- gaGGUGCGCGCGua---UGUCGa---GGAGuu -5'
6789 5' -56.4 NC_001875.2 + 14003 0.67 0.80394
Target:  5'- uCUCgCACGCGUcgGUGUAGCUCUUCGAa -3'
miRNA:   3'- -GAG-GUGCGCGcgUAUGUCGAGGAGUU- -5'
6789 5' -56.4 NC_001875.2 + 21258 0.67 0.794757
Target:  5'- gUCCAgGCGCGCGcGCGGCgcggCUaCGAg -3'
miRNA:   3'- gAGGUgCGCGCGUaUGUCGa---GGaGUU- -5'
6789 5' -56.4 NC_001875.2 + 91142 0.67 0.794757
Target:  5'- --aCGCGCGCGCG-GCGGUUCCa--- -3'
miRNA:   3'- gagGUGCGCGCGUaUGUCGAGGaguu -5'
6789 5' -56.4 NC_001875.2 + 122215 0.67 0.785421
Target:  5'- -aCgGCGCGCGCAcGCAGCUUagcaCAAa -3'
miRNA:   3'- gaGgUGCGCGCGUaUGUCGAGga--GUU- -5'
6789 5' -56.4 NC_001875.2 + 117299 0.67 0.77594
Target:  5'- -gCCGCGUGCGC---CAGCUCaCUCu- -3'
miRNA:   3'- gaGGUGCGCGCGuauGUCGAG-GAGuu -5'
6789 5' -56.4 NC_001875.2 + 41408 0.67 0.766324
Target:  5'- cCUCUGCGCGCGCGUcuACAGCguaaaCAGg -3'
miRNA:   3'- -GAGGUGCGCGCGUA--UGUCGagga-GUU- -5'
6789 5' -56.4 NC_001875.2 + 81301 0.68 0.746727
Target:  5'- --aCACGCGCGCcgccgGCGGCgCCUCc- -3'
miRNA:   3'- gagGUGCGCGCGua---UGUCGaGGAGuu -5'
6789 5' -56.4 NC_001875.2 + 91413 0.68 0.736766
Target:  5'- uCUCgAUgGCGCGCGU-CAGCcCCUCGGu -3'
miRNA:   3'- -GAGgUG-CGCGCGUAuGUCGaGGAGUU- -5'
6789 5' -56.4 NC_001875.2 + 56469 0.68 0.726709
Target:  5'- gUCCGCGCGCGUGUugguCAGCgCCa--- -3'
miRNA:   3'- gAGGUGCGCGCGUAu---GUCGaGGaguu -5'
6789 5' -56.4 NC_001875.2 + 27721 0.68 0.706348
Target:  5'- -cCCACgGCGCGCAguagauccUugAGCuuuUCCUCAAa -3'
miRNA:   3'- gaGGUG-CGCGCGU--------AugUCG---AGGAGUU- -5'
6789 5' -56.4 NC_001875.2 + 127255 0.68 0.706348
Target:  5'- cCUCUuCGUGCGCAUgucgggcauGCGGCUgCUCGc -3'
miRNA:   3'- -GAGGuGCGCGCGUA---------UGUCGAgGAGUu -5'
6789 5' -56.4 NC_001875.2 + 42587 0.68 0.706348
Target:  5'- --gCACGCGCGCGU-CAGCUCggCGc -3'
miRNA:   3'- gagGUGCGCGCGUAuGUCGAGgaGUu -5'
6789 5' -56.4 NC_001875.2 + 37145 0.69 0.685724
Target:  5'- uUCCGCGUGCGCAUcGCcgGGUUCCa--- -3'
miRNA:   3'- gAGGUGCGCGCGUA-UG--UCGAGGaguu -5'
6789 5' -56.4 NC_001875.2 + 100846 0.69 0.685724
Target:  5'- -gCCGCGCGCGCGUAaucuuGCUUUUUGAg -3'
miRNA:   3'- gaGGUGCGCGCGUAUgu---CGAGGAGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.